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GEO accession:
Sample GSM305440
Query DataSets for GSM305440
Status
Public on Aug 13, 2008
Title
Uninfected D6_UT
Sample type
RNA
Source name
peripheral blood monocytes
Organism
Homo sapiens
Characteristics
healthy adult
Treatment protocol
100 MOI of F. novicida or Schu S4 for 24 hours
Growth protocol
RPMI-1640 with 10% FBS
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
biotin
Label protocol
Affymetrix standard
Hybridization protocol
Affymetrix standard
Scan protocol
Affymetrix standard
Description
none
Data processing
R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
Submission date
Jul 14, 2008
Last update date
Aug 28, 2018
Contact name
Jonathan P Butchar
E-mail(s)
jon.butchar@osumc.edu
Organization name
The Ohio State University
Department
Internal Medicine
Lab
Tridandapani
Street address
400 W. 12th Avenue
City
Columbus
State/province
OH
ZIP/Postal code
43210
Country
USA
Platform ID
GPL570
Series (1)
GSE12108
Microarray analysis of human monocytes infected with Francisella tularensis
Relations
Reanalyzed by
GSE49910
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
log2 expression value, calculated by gcrma
Data table
ID_REF
VALUE
1007_s_at
3.47470531381048
1053_at
5.16851242686256
117_at
9.76145368830714
121_at
7.83250672037518
1255_g_at
2.32824893677822
1294_at
8.67515346763836
1316_at
2.47564916417947
1320_at
2.32824893677822
1405_i_at
6.83951371025312
1431_at
2.32824893677822
1438_at
2.32824893677822
1487_at
6.15017151678333
1494_f_at
2.58267905338982
1552256_a_at
6.2114331553955
1552257_a_at
6.95759264773317
1552258_at
2.6297496121144
1552261_at
2.3292883573124
1552263_at
7.79850122683419
1552264_a_at
8.3634887133717
1552266_at
2.32824893677822
Total number of rows:
54675
Table truncated, full table size
1480 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM305440.CEL.gz
4.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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