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Sample GSM3179081 Query DataSets for GSM3179081
Status Public on Jun 03, 2019
Title 1429F_(Porcine)
Sample type RNA
 
Source name Liver
Organism Sus scrofa
Characteristics tissue: Liver
age: 190 days
Growth protocol Commercial fedding and fattening until slaughtering
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Gene expression data from Liver
Data processing The data were analyzed with Microarray affy package in R using default analysis settings and RMA algorithm was used for pre-processing background correction and normalisation of expression values.
 
Submission date Jun 07, 2018
Last update date Jun 04, 2019
Contact name Emilio Marmol
E-mail(s) emilio.marmol@cragenomica.es
Phone 685106462
Organization name Center for Research in Agrigenomics (CRAG)
Department Animal Genetics
Street address CSIC IRTA UAB UB Edifici CRAG., Campus Universitat Autònoma de Barcelona (UAB), Bellaterra (Cerdanyola del Vallès)
City Barcelona
State/province Barcelona
ZIP/Postal code 08193
Country Spain
 
Platform ID GPL3533
Series (1)
GSE115484 Expression data from Microarray experiment in muscle and liver tissues

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
AFFX-BioB-3_at 7.864838657
AFFX-BioB-5_at 7.986865871
AFFX-BioB-M_at 8.469964994
AFFX-BioC-3_at 9.841935184
AFFX-BioC-5_at 9.322435167
AFFX-BioDn-3_at 11.79291018
AFFX-BioDn-5_at 10.30454117
AFFX-CreX-3_at 13.83194201
AFFX-CreX-5_at 13.33612331
AFFX-DapX-3_at 11.32447368
AFFX-DapX-5_at 10.13880524
AFFX-DapX-M_at 11.06944942
AFFX-LysX-3_at 8.656659069
AFFX-LysX-5_at 6.364998435
AFFX-LysX-M_at 7.687988864
AFFX-PheX-3_at 8.173451154
AFFX-PheX-5_at 7.324177365
AFFX-PheX-M_at 7.972916719
AFFX-r2-Bs-dap-3_at 11.7115078
AFFX-r2-Bs-dap-5_at 10.56400658

Total number of rows: 24123

Table truncated, full table size 698 Kbytes.




Supplementary file Size Download File type/resource
GSM3179081_1429F_Porcine_.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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