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Sample GSM3179089 Query DataSets for GSM3179089
Status Public on Jun 03, 2019
Title 1467F_(Porcine)
Sample type RNA
 
Source name Liver
Organism Sus scrofa
Characteristics tissue: Liver
age: 190 days
Growth protocol Commercial fedding and fattening until slaughtering
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Gene expression data from Liver
Data processing The data were analyzed with Microarray affy package in R using default analysis settings and RMA algorithm was used for pre-processing background correction and normalisation of expression values.
 
Submission date Jun 07, 2018
Last update date Jun 04, 2019
Contact name Emilio Marmol
E-mail(s) emilio.marmol@cragenomica.es
Phone 685106462
Organization name Center for Research in Agrigenomics (CRAG)
Department Animal Genetics
Street address CSIC IRTA UAB UB Edifici CRAG., Campus Universitat Autònoma de Barcelona (UAB), Bellaterra (Cerdanyola del Vallès)
City Barcelona
State/province Barcelona
ZIP/Postal code 08193
Country Spain
 
Platform ID GPL3533
Series (1)
GSE115484 Expression data from Microarray experiment in muscle and liver tissues

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
AFFX-BioB-3_at 7.60741763
AFFX-BioB-5_at 7.645030898
AFFX-BioB-M_at 8.069078259
AFFX-BioC-3_at 9.528828942
AFFX-BioC-5_at 8.99882776
AFFX-BioDn-3_at 11.74557622
AFFX-BioDn-5_at 10.32051641
AFFX-CreX-3_at 13.49102362
AFFX-CreX-5_at 13.01115829
AFFX-DapX-3_at 6.582427947
AFFX-DapX-5_at 5.655578413
AFFX-DapX-M_at 6.506204413
AFFX-LysX-3_at 4.729231665
AFFX-LysX-5_at 3.181317444
AFFX-LysX-M_at 3.891861989
AFFX-PheX-3_at 5.406821373
AFFX-PheX-5_at 3.874902074
AFFX-PheX-M_at 4.378283444
AFFX-r2-Bs-dap-3_at 6.913184527
AFFX-r2-Bs-dap-5_at 6.042768392

Total number of rows: 24123

Table truncated, full table size 698 Kbytes.




Supplementary file Size Download File type/resource
GSM3179089_1467F_Porcine_.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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