NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM336405 Query DataSets for GSM336405
Status Public on Mar 01, 2009
Title Srf control_2
Sample type RNA
 
Source name Srf loxP/+ AlfpCre male liver; control sample
Organism Mus musculus
Characteristics Srf loxP/+ AlfpCre male liver
3 weeks old
control sample
Extracted molecule total RNA
Extraction protocol Rneasy mini kit (qiagen)
Label biotin
Label protocol Affymetrix one-cycle target labeling
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description Serum response factor (SRF) is a transcription factor that binds to the serum response element (SRE) of genes that are expressed in response to mitogens. SRF plays essential roles in muscle and nervous system development; however, little is known about the role of SRF during liver growth and function. To examine the function of SRF in the liver, we generated mice in which the Srf gene was specifically disrupted in hepatocytes. The survival of mice lacking hepatic SRF activity was lower than that of control mice; moreover, surviving mutant mice were smaller and had lower blood glucose and triglyceride levels compared with control mice. Srf-deficient livers were also smaller than control livers, hepatocyte morphology was abnormal, and liver-cell proliferation and viability was compromised. Gene array and quantitative RT-PCR analysis of SRF depleted livers revealed a reduction in mRNAs encoding components of the growth hormone/IGF1 pathway, cyclins, several metabolic regulators, and cytochrome p450 enzymes. Conclusion: SRF is essential for hepatocyte proliferation and survival, liver function, and control of postnatal body growth by regulating hepatocyte gene expression.
Data processing Standard GCOS data processing produced the values provided.
 
Submission date Oct 23, 2008
Last update date Aug 28, 2018
Contact name Stephen A Duncan
E-mail(s) duncanst@musc.edu
Phone 843-792-9104
Organization name Medical University South Carolina
Department Regenerative Medicine and Cell Biology
Lab Duncan Lab
Street address 173 Ashley Avenue, BSB 6th Floor, Room 657A
City Charleston
State/province SC
ZIP/Postal code 29425
Country USA
 
Platform ID GPL1261
Series (1)
GSE13333 Srf conditional knockout in the mouse liver
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE affymetrix GCOS-derived signal value (MAS5)
ABS_CALL affymetrix GCOS-derived presence/absence call
DETECTION P-VALUE affymetrix GCOS-derived p value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 86.6234 P 0.00159257
AFFX-BioB-M_at 173.902 P 8.14279e-05
AFFX-BioB-3_at 84.4596 P 4.42873e-05
AFFX-BioC-5_at 347.804 P 5.16732e-05
AFFX-BioC-3_at 376.039 P 4.42873e-05
AFFX-BioDn-5_at 796.038 P 4.42873e-05
AFFX-BioDn-3_at 1329.88 P 4.42873e-05
AFFX-CreX-5_at 3577.47 P 5.16732e-05
AFFX-CreX-3_at 4176.33 P 4.42873e-05
AFFX-DapX-5_at 409.758 P 4.42873e-05
AFFX-DapX-M_at 777.212 P 5.16732e-05
AFFX-DapX-3_at 797.191 P 4.42873e-05
AFFX-LysX-5_at 48.7239 P 5.16732e-05
AFFX-LysX-M_at 65.5374 P 0.000126798
AFFX-LysX-3_at 138.86 P 6.02111e-05
AFFX-PheX-5_at 46.9111 P 5.16732e-05
AFFX-PheX-M_at 74.9772 P 5.16732e-05
AFFX-PheX-3_at 90.4853 P 0.000753643
AFFX-ThrX-5_at 112.82 P 5.16732e-05
AFFX-ThrX-M_at 153.366 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1375 Kbytes.




Supplementary file Size Download File type/resource
GSM336405.CEL.gz 3.2 Mb (ftp)(http) CEL
GSM336405.CHP.gz 252.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap