|
| Status |
Public on Jan 07, 2019 |
| Title |
Indian Rhesus Macaque Tumor 1 Poly-A selected |
| Sample type |
SRA |
| |
|
| Source name |
lymphoma
|
| Organisms |
Macaca mulatta; Macacine gammaherpesvirus 4 |
| Characteristics |
infection 1: rLCV+
infection 2: SIV+
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was harvested using Trizol.
1 ug of RNA was input into the Illumina TruSeq RNA Sample Prep Kit v2 (Cat# RS-122-2001) to construct the sequencing libraries.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
Poly-A selected
Tumor 1
|
| Data processing |
Reads were aligned using STAR version 2.5
Backsplice junctions were called using find_circ version 1.2
Genome_build: MM10 + MHV68, HG38 + KSHV, MMUL8.01 + rLCV
Supplementary_files_format_and_content: Backsplice coordinates and counts of RNAse R sequencing data in BED format
|
| |
|
| Submission date |
Jan 06, 2019 |
| Last update date |
Jan 08, 2019 |
| Contact name |
Erik K Flemington |
| E-mail(s) |
eflemin@tulane.edu
|
| Phone |
504 988-1167
|
| Organization name |
Tulane Health Sciences Center
|
| Department |
Pathology
|
| Street address |
1430 Tulane Ave., SL79
|
| City |
New Orleans |
| State/province |
LA |
| ZIP/Postal code |
70112 |
| Country |
USA |
| |
|
| Platform ID |
GPL26010 |
| Series (1) |
| GSE124711 |
Comparative Analysis of Gammaherpesvirus Circular RNA |
|
| Relations |
| BioSample |
SAMN10698026 |
| SRA |
SRX5210644 |
