|
Status |
Public on Jan 31, 2019 |
Title |
HIPPO_Control_Br1539 |
Sample type |
genomic |
|
|
Source name |
HIPPO
|
Organism |
Homo sapiens |
Characteristics |
sample_plate: Plate 1 sentrix_position: R05C02 brnum: Br1539 brnum: brain tissue region: HIPPO disease state (dx): Control age: 54.59 Sex: F race: AA negcontrol_pc1: 4.22259587483416 negcontrol_pc2: -4.92643440961763 neun_pos: 0.118065514322293 snppc1: 0.0919891
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Following manufacturer's protocol
|
Label |
Cy3/Cy5
|
Label protocol |
Following manufacturer's protocol
|
|
|
Hybridization protocol |
Following manufacturer's protocol
|
Scan protocol |
Following manufacturer's protocol
|
Description |
Postmortem human brain tissue samples from four brain regions in an Alzheimers disease case-control series used to generate Human450k DNA methylation data. 1-G03
|
Data processing |
idat files were imported with minfi then stratified quantile normalized in minfi. [matrix_processed.csv] Stratified quantile normalized beta values for tested probes (see publication). [matrix_signal_intensities.csv] Unmethylated and methylated signal intensities
|
|
|
Submission date |
Jan 30, 2019 |
Last update date |
Jan 31, 2019 |
Contact name |
Stephen A Semick |
Organization name |
University of Maryland School of Medicine
|
Street address |
655 W Baltimore St S
|
City |
Baltimore |
State/province |
MD |
ZIP/Postal code |
21201 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (1) |
GSE125895 |
Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer’s disease |
|