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Sample GSM3892 Query DataSets for GSM3892
Status Public on Feb 13, 2003
Title HU10Kb482
Sample type RNA
 
Channel 1
Source name Stratagene universal reference
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Embryonic lung fibroblasts (HLFs)
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description HLFs were infected with lentivirus pAB303 expressing no insert from the H1 polIII promoter (control virus). RNA was amplified by one round of T7 transcription and labelled by reverse transcription in the presence of Cy3 and Cy5 dCTP.
 
Submission date Feb 11, 2003
Last update date Nov 21, 2005
Contact name Richard Iggo
E-mail(s) r.iggo@bordeaux.unicancer.fr
Phone +33 5 56 33 04 23
Fax +33 5 56 33 32 06
Organization name University of Bordeaux
Department Bergonie Cancer Institute
Lab INSERM U916
Street address 229 cours de l'Argonne
City Bordeaux
ZIP/Postal code 33076
Country France
 
Platform ID GPL247
Series (1)
GSE282 Interferon induction by shRNA

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
CH1I Scanalyze Ch1 intensity
CH1B Scanalyze Ch1 background
CH2I Scanalyze Ch2 intensity
CH2B Scanalyze Ch2 background
RAT2 Scanalyze Ratio of mean intensities
MRAT Scanalyze Median ratio of intensities
FLAG Manual quality flag (1 = bad)
UNF_VALUE Log2 ratio, no bkg subtraction, S normalisation in sma in R

Data table
ID_REF VALUE CH1I CH1B CH2I CH2B RAT2 MRAT FLAG UNF_VALUE
1 11438 398 9816 95 0.8805 0.8322 0
2 0.1117 2546 658 1669 95 0.8337 0.7794 0 0.1117
3 0.9934 3685 576 11203 97 3.572 3.406 0 0.9934
4 -0.3181 783 393 347 98 0.6385 0.5372 0 -0.3181
5 -0.3487 1914 420 770 95 0.4518 0.4615 0 -0.3487
6 0.5177 4921 422 10388 100 2.287 2.221 0 0.5177
7 1.1798 2596 571 8223 100 4.011 3.57 0 1.1798
8 -0.7444 1364 866 391 99 0.5863 0.3386 0 -0.7444
9 -0.3072 3283 1261 1926 101 0.9026 0.7935 0 -0.3072
10 -0.9773 7937 1207 4358 103 0.6322 0.573 0 -0.9773
11 -0.4475 7185 469 6566 101 0.9626 0.911 0 -0.4475
12 1553 296 743 97 0.5139 0.5209 0
13 0.6236 923 302 811 92 1.158 1.024 0 0.6236
14 0.1724 10267 284 17365 94 1.73 1.699 0 0.1724
15 0.7537 2560 268 4861 94 2.08 1.903 0 0.7537
16 1.6475 1020 278 2452 98 3.173 2.774 0 1.6475
17 -0.4647 3611 294 2005 93 0.5764 0.5796 0 -0.4647
18 -0.108 3868 263 3634 92 0.9825 1.053 0 -0.108
19 0.1098 3936 382 4812 90 1.329 1.116 0 0.1098
20 0.2769 3235 575 4184 96 1.537 1.267 0 0.2769

Total number of rows: 10368

Table truncated, full table size 502 Kbytes.




Supplementary data files not provided
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