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GEO accession:
Sample GSM39106
Query DataSets for GSM39106
Status
Public on Jan 22, 2005
Title
SeroNeg-3
Sample type
RNA
Source name
Human PBMC
Organism
Homo sapiens
Extracted molecule
total RNA
Description
HIV seronegative sample
Keywords = HIV, Human, PBMC, in vivo
Submission date
Jan 19, 2005
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL201
Series (1)
GSE2171
HIV-1 infection in human PBMCs in vivo
Data table header descriptions
ID_REF
Affymetrix ID
VALUE
signal intensity output from MAS5.0 with target signal intensity being set to 500
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1792.7
P
0.000390
AFFX-BioB-M_at
2500.8
P
0.000052
AFFX-BioB-3_at
1289.5
P
0.000052
AFFX-BioC-5_at
5060.4
P
0.000070
AFFX-BioC-3_at
3564.8
P
0.000052
AFFX-BioDn-5_at
6768.5
P
0.000044
AFFX-BioDn-3_at
28417.5
P
0.000052
AFFX-CreX-5_at
61978.2
P
0.000044
AFFX-CreX-3_at
70367.4
P
0.000044
AFFX-HUMISGF3A/M97935_5_at
62.7
A
0.617401
AFFX-HUMISGF3A/M97935_MA_at
372.7
P
0.039661
AFFX-HUMISGF3A/M97935_MB_at
268.3
P
0.005565
AFFX-HUMISGF3A/M97935_3_at
861.2
P
0.000581
AFFX-HUMRGE/M10098_5_at
1862.4
P
0.000044
AFFX-HUMRGE/M10098_M_at
609.4
P
0.000509
AFFX-HUMRGE/M10098_3_at
2586.7
P
0.000095
AFFX-HUMGAPDH/M33197_5_at
8049.8
P
0.000052
AFFX-HUMGAPDH/M33197_M_at
9631.1
P
0.000147
AFFX-HUMGAPDH/M33197_3_at
11976.9
P
0.000044
AFFX-HSAC07/X00351_5_at
19091.2
P
0.000052
Total number of rows:
8793
Table truncated, full table size
237 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM39106.cel.gz
1.3 Mb
(ftp)
(http)
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