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Sample GSM400462 Query DataSets for GSM400462
Status Public on May 08, 2009
Title mIMCD-3 67
Sample type RNA
 
Source name mIMCD-3
Organism Mus musculus
Characteristics cell line: mIMCD-3
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description mIMCD-3
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.044353
4304921 2.20168
4304922 3.279477
4304923 7.481076
4304925 8.734898
4304927 4.166585
4304928 11.757291
4304929 9.679949
4304930 2.887439
4304931 3.33036
4304932 5.236384
4304933 3.959316
4304934 3.1733
4304935 3.597713
4304937 3.052503
4304938 7.34936
4304939 2.569129
4304940 4.167925
4304941 6.975843
4304942 8.215843

Total number of rows: 1201338

Table truncated, full table size 19842 Kbytes.




Supplementary file Size Download File type/resource
GSM400462.CEL.gz 38.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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