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Sample GSM400481 Query DataSets for GSM400481
Status Public on May 08, 2009
Title liver 86
Sample type RNA
 
Source name liver
Organism Mus musculus
Characteristics tissue: liver
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description liver
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 2.131429
4304921 2.041218
4304922 2.471941
4304923 5.4538
4304925 7.89664
4304927 3.396731
4304928 12.156504
4304929 10.314943
4304930 3.557232
4304931 4.148733
4304932 4.740899
4304933 6.669151
4304934 4.327232
4304935 1.952681
4304937 2.5061
4304938 2.814873
4304939 2.281683
4304940 4.275164
4304941 5.641552
4304942 8.248897

Total number of rows: 1201338

Table truncated, full table size 19842 Kbytes.




Supplementary file Size Download File type/resource
GSM400481.CEL.gz 39.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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