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Sample GSM400487 Query DataSets for GSM400487
Status Public on May 08, 2009
Title amygdala 92
Sample type RNA
 
Source name amygdala
Organism Mus musculus
Characteristics tissue: amygdala
Treatment protocol RNA extraction from tissues of naïve male (except females for specific organs) C57BL/6J mice, 8-10 weeks of age
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from cell pellets using Trizol (Invitrogen, Carlsbad, CA) followed by clean up using the RNeasy kit (Qiagen, Valencia, CA, USA).
Label biotin
Label protocol 2 ug total RNA was used with the GeneChip WT Sense Target Labeling Kit
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures using GCS3000 scanner
Description amygdala
Data processing RMA
 
Submission date May 06, 2009
Last update date May 07, 2009
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL6193
Series (1)
GSE15998 Mouse Exon Atlas

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
4304920 1.837879
4304921 3.201814
4304922 3.285357
4304923 6.605505
4304925 6.393138
4304927 2.640401
4304928 11.857595
4304929 10.416849
4304930 3.172024
4304931 4.11962
4304932 4.12848
4304933 6.185534
4304934 3.885697
4304935 2.644095
4304937 8.931043
4304938 1.667733
4304939 1.613994
4304940 3.916805
4304941 5.218228
4304942 8.433445

Total number of rows: 1201338

Table truncated, full table size 19840 Kbytes.




Supplementary file Size Download File type/resource
GSM400487.CEL.gz 40.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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