|
| Status |
Public on Aug 27, 2009 |
| Title |
colon_INT_T202_exon |
| Sample type |
RNA |
| |
|
| Source name |
Colon, RNA
|
| Organism |
Homo sapiens |
| Characteristics |
gender: M
age: 67
dimension: 5
stage: IV
status: 1
survival: 11
apc: 1
kras: 0
tp53: 1
chr18qloh: 0
|
| Biomaterial provider |
Fondazione IRCCS Istituto Nazionale dei Tumori (INT)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Standard Affymetrix procedures.
|
| |
|
| Hybridization protocol |
Standard Affymetrix procedures.
|
| Scan protocol |
Standard Affymetrix procedures using Gene ChIP Scanner 3000.
|
| Description |
Gene expression data of sporadic colon cancer patient (INTcartella:2013277, INTistologico:298768I)
|
| Data processing |
RMA implementation of Affymetrix Power Tools version 1.8.6 was used to analyze the 'core' subset of probes (HuEx-1_0-st-v2.r2.dt1.hg18.core.mps). All additional analysis was performed in R/Bioconductor and is available as a reproducible Sweave document from <http://pierotti.group.ifom-ieo-campus.it/suppl/crc.html>.
|
| |
|
| Submission date |
May 15, 2009 |
| Last update date |
Aug 27, 2009 |
| Contact name |
James F Reid |
| E-mail(s) |
james.reid@ifom-ieo-campus.it
|
| Organization name |
Fondazione Istituto FIRC di Oncologia Molecolare
|
| Department |
Molecular Genetics of Cancer
|
| Lab |
Cancer genomics
|
| Street address |
Via Adamello, 16
|
| City |
Milano |
| ZIP/Postal code |
20139 |
| Country |
Italy |
| |
|
| Platform ID |
GPL5175 |
| Series (1) |
| GSE16125 |
Integrative approach for prioritizing cancer genes in sporadic colon cancer |
|
