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| Status |
Public on May 15, 2020 |
| Title |
Marmoset_Heart_Input |
| Sample type |
SRA |
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| Source name |
Marmoset_Heart_Input
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| Organism |
Callithrix jacchus |
| Characteristics |
tissue: Heart
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
TruSeq DNA sample preparation kit (Illumina)
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina NextSeq 500 |
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| Data processing |
ChIP-seq: Illumina sequencing reads were aligned using bowtie version 1.1.2 ((http://bowtie-bio.sourceforge.net) excluding reads with more than 1 mismatch (seed length of 36 base pairs (bp)) or with multiple alignment. Duplicate reads were discarded using Samtools version 1.3.1. Peak-calling was done using MACS2 version 2.1.1.20160309 (pvalue < 10-5, extsize 300, local lambda 100,000). Reads in peaks were counted using Bedtools version 2.26.
Genome_build: Callithrix jacchus: calJac3
Supplementary_files_format_and_content: ChIP-seq peaks called by MACS2 are in _peaks.narrowPeak; H3K27ac bigwig files are in .bw
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| Submission date |
Dec 06, 2019 |
| Last update date |
May 15, 2020 |
| Contact name |
Menno P Creyghton |
| E-mail(s) |
m.creyghton@hubrecht.eu
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| Organization name |
Hubrecht Institute
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| Lab |
Creyghton
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| Street address |
Uppsalalaan 8
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| City |
Utrecht |
| ZIP/Postal code |
3584 CT |
| Country |
Netherlands |
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| Platform ID |
GPL26636 |
| Series (1) |
| GSE141563 |
Novel enhancer emerge with high interindividual variability and less frequently associate with disease |
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| Relations |
| BioSample |
SAMN13496913 |
| SRA |
SRX7278240 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data not provided for this record |
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