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GEO accession:
Sample GSM4250802
Query DataSets for GSM4250802
Status
Public on Jan 06, 2020
Title
long read RNA-seq from K562 (ENCLB095ZGG)
Sample type
SRA
Source name
Homo sapiens K562 cell line
Organism
Homo sapiens
Characteristics
line: K562
biomaterial_type: cell line
description: Homo sapiens K562 immortalized cell line
biosample encode accession: ENCBS859NNO (SAMN13691252)
Sex: female
health state: chronic myelogenous leukemia (CML)
dev stage: adult
age: 53 year
donor_id: ENCDO000AAD
lab: Ali Mortazavi, UCI
source: ATCC
link: ENCBS859NNO at ENCODE;
https://www.encodeproject.org/ENCBS859NNO/
link: Derived from ENCODE donor ENCDO000AAD;
https://www.encodeproject.org/ENCDO000AAD/
Extracted molecule
total RNA
Extraction protocol
pipeline protocol:
https://www.encodeproject.org/documents/7ec9d66a-3b7e-4183-8677-e1df14770b44/@@download/attachment/ENCODE%20Long%20Read%20RNA-Seq%20Analysis%20Pipeline%20%28Human%29.pdf
general protocol:
https://www.encodeproject.org/documents/9d64c094-3f6b-49ae-b344-ccdf6ae3eb0c/@@download/attachment/Protocol_ENCODEsubmission_nosizeselected%20%281%29.pdf
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
cDNA
Instrument model
Sequel
Description
https://www.encodeproject.org/experiments/ENCSR589FUJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Homo sapiens K562 immortalized cell line
experiment encode accession: ENCSR589FUJ
assay title: long read RNA-seq
assembly: GRCh38
encode release date: 2019-06-28
lab: Ali Mortazavi, UCI
library encode accession: ENCLB095ZGG
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Jan 04, 2020
Last update date
Jan 08, 2020
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL26180
Series (1)
GSE143129
long read RNA-seq from K562 (ENCSR589FUJ)
Relations
BioSample
SAMN13691252
SRA
SRX7509712
Supplementary file
Size
Download
File type/resource
GSM4250802_ENCFF514QIS_transcriptome_annotations_GRCh38.gtf.gz
41.7 Mb
(ftp)
(http)
GTF
GSM4250802_ENCFF653KIB_transcript_quantifications_GRCh38.tsv.gz
1.8 Mb
(ftp)
(http)
TSV
GSM4250802_ENCLB095ZGG_README.txt.gz
547 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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