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GEO accession:
Sample GSM4250809
Query DataSets for GSM4250809
Status
Public on Jan 06, 2020
Title
long read RNA-seq from mucosa of descending colon (ENCLB620TRY)
Sample type
SRA
Source name
Homo sapiens female adult (61 year) mucosa of descending colon tissue, preserved by flash-freezing
Organism
Homo sapiens
Characteristics
tissue_type: mucosa of descending colon
biomaterial_type: tissue
biosample encode accession: ENCBS825BLU (SAMN13691220)
Sex: female
health state: DM: no; HTN: no; CAD: no; lungs with moderate emphysema
dev stage: adult
age: 61 year
donor_id: ENCDO186XRB
lab: Michael Snyder, Stanford
source: Yiing Lin, MD, PhD
link: ENCBS825BLU at ENCODE;
https://www.encodeproject.org/ENCBS825BLU/
link: Derived from ENCODE donor ENCDO186XRB;
https://www.encodeproject.org/ENCDO186XRB/
link: general protocol;
https://www.encodeproject.org/documents/c4b8952c-d9f1-42e7-8ea5-54659d14f46b/@@download/attachment/ENCODE4_Snyder_HumanTissuePreservation_Flash_v1.pdf
Extracted molecule
total RNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/2297237f-dfb0-424d-a386-c350ffe8dbe3/@@download/attachment/ENCODE_protocol_brain_illumina.pdf
Library strategy
RNA-Seq
Library source
transcriptomic
Library selection
cDNA
Instrument model
Sequel
Description
https://www.encodeproject.org/experiments/ENCSR803XXZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ENC4_78 W80 mucosa of descending colon
experiment encode accession: ENCSR803XXZ
assay title: long read RNA-seq
assembly: GRCh38
encode release date: 2019-12-19
lab: Ali Mortazavi, UCI
library encode accession: ENCLB620TRY
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Jan 04, 2020
Last update date
Jan 08, 2020
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL26180
Series (1)
GSE143132
long read RNA-seq from mucosa of descending colon (ENCSR803XXZ)
Relations
BioSample
SAMN13691220
SRA
SRX7509719
Supplementary file
Size
Download
File type/resource
GSM4250809_ENCFF198RKB_transcript_quantifications_GRCh38.tsv.gz
2.2 Mb
(ftp)
(http)
TSV
GSM4250809_ENCFF780YNG_transcriptome_annotations_GRCh38.gtf.gz
42.8 Mb
(ftp)
(http)
GTF
GSM4250809_ENCLB620TRY_README.txt.gz
542 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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