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Sample GSM4250812 Query DataSets for GSM4250812
Status Public on Jan 06, 2020
Title long read RNA-seq from HFFc6 (ENCLB678ULN)
Sample type SRA
 
Source name Homo sapiens HFFc6 cell line
Organism Homo sapiens
Characteristics line: HFFc6
biomaterial_type: cell line
description: Clonal line 6 derived from hTert immortalized HFF parental line
biosample encode accession: ENCBS974NEC (SAMN13691248)
Sex: male
health state: normal
dev stage: newborn
age: 0 year
donor_id: ENCDO737WWC
lab: Ali Mortazavi, UCI
source: Job Dekker
link: ENCBS974NEC at ENCODE; https://www.encodeproject.org/ENCBS974NEC/
link: Derived from ENCODE donor ENCDO737WWC; https://www.encodeproject.org/ENCDO737WWC/
Extracted molecule total RNA
Extraction protocol general protocol: https://www.encodeproject.org/documents/54012fc3-644e-49af-97e4-888226753fd9/@@download/attachment/Protocol_ENCODEsubmission_nosizeselected-2.pdf
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Sequel
 
Description https://www.encodeproject.org/experiments/ENCSR902GAF/
***************
biological replicate number: 1
technical replicate number: 1
description: Clonal line 6 derived from hTert immortalized HFF parental line
experiment encode accession: ENCSR902GAF
assay title: long read RNA-seq
assembly: GRCh38
encode release date: 2019-12-05
lab: Ali Mortazavi, UCI
library encode accession: ENCLB678ULN
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jan 04, 2020
Last update date Jan 08, 2020
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL26180
Series (1)
GSE143134 long read RNA-seq from HFFc6 (ENCSR902GAF)
Relations
BioSample SAMN13691248
SRA SRX7509722

Supplementary file Size Download File type/resource
GSM4250812_ENCFF155NBT_transcriptome_annotations_GRCh38.gtf.gz 47.3 Mb (ftp)(http) GTF
GSM4250812_ENCFF899JSE_transcript_quantifications_GRCh38.tsv.gz 3.1 Mb (ftp)(http) TSV
GSM4250812_ENCLB678ULN_README.txt.gz 537 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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