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Sample GSM4250813

Query DataSets for GSM4250813

Status

Public on Jan 06, 2020

Title

long read RNA-seq from HFFc6 (ENCLB952ETR)

Sample type

SRA

Source name

Homo sapiens HFFc6 cell line

Organism

Homo sapiens

Characteristics

line: HFFc6
biomaterial_type: cell line
description: Clonal line 6 derived from hTert immortalized HFF parental line
biosample encode accession: ENCBS793IWN (SAMN13691245)
Sex: male
health state: normal
dev stage: newborn
age: 0 year
donor_id: ENCDO737WWC
lab: Ali Mortazavi, UCI
source: Job Dekker
link: ENCBS793IWN at ENCODE; https://www.encodeproject.org/ENCBS793IWN/
link: Derived from ENCODE donor ENCDO737WWC; https://www.encodeproject.org/ENCDO737WWC/

Extracted molecule

total RNA

Extraction protocol

general protocol: https://www.encodeproject.org/documents/54012fc3-644e-49af-97e4-888226753fd9/@@download/attachment/Protocol_ENCODEsubmission_nosizeselected-2.pdf

Library strategy

RNA-Seq

Library source

transcriptomic

Library selection

cDNA

Instrument model

Sequel

Description

https://www.encodeproject.org/experiments/ENCSR902GAF/
***************
biological replicate number: 3
technical replicate number: 1
description: Clonal line 6 derived from hTert immortalized HFF parental line
experiment encode accession: ENCSR902GAF
assay title: long read RNA-seq
assembly: GRCh38
encode release date: 2019-12-05
lab: Ali Mortazavi, UCI
library encode accession: ENCLB952ETR

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Jan 04, 2020

Last update date

Jan 08, 2020

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL26180

Series (1)

GSE143134

long read RNA-seq from HFFc6 (ENCSR902GAF)

Relations

BioSample

SAMN13691245

SRA

SRX7509723

Supplementary file	Size	Download	File type/resource
GSM4250813_ENCFF405EGI_transcriptome_annotations_GRCh38.gtf.gz	46.0 Mb	(ftp)(http)	GTF
GSM4250813_ENCFF538WPG_transcript_quantifications_GRCh38.tsv.gz	2.7 Mb	(ftp)(http)	TSV
GSM4250813_ENCLB952ETR_README.txt.gz	539 b	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file