 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on May 29, 2020 |
| Title |
IP170_2 |
| Sample type |
SRA |
| |
|
| Source name |
brain
|
| Organism |
Mus musculus |
| Characteristics |
tissue: hippocampus
treatment: PTBP1 OE
|
| Extracted molecule |
total RNA |
| Extraction protocol |
TRAP
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
IP170_rawcount.txt
|
| Data processing |
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm10 genome assembly using STAR version 2.5.3a
Reads falling on each gene are counted by HT-Seq
Genome_build: mm10
Supplementary_files_format_and_content: rawcount
Supplementary_files_format_and_content: dexseq_count
|
| |
|
| Submission date |
May 28, 2020 |
| Last update date |
Jun 30, 2020 |
| Contact name |
Jean-Pierre Roussarie |
| E-mail(s) |
jproussa@bu.edu
|
| Organization name |
Boston University School of Medicine
|
| Department |
Anatomy & Neurobiology
|
| Street address |
72 E Concord Street
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02118 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (1) |
| GSE151356 |
RNAseq anaysis of entorhinal cortex layer II neurons upon Ptbp1 modulation |
|
| Relations |
| BioSample |
SAMN15047131 |
| SRA |
SRX8413410 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4575994_IP170_2_dexseq_count.txt.gz |
1.3 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
|
|
|
|
 |
