|
| Status |
Public on Aug 02, 2023 |
| Title |
NSG3 (Affymetrix) |
| Sample type |
RNA |
| |
|
| Source name |
normal tissue FF
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: normal salivary gland tissue
obtained from: Sahlgrenska University Hospital
gender: na
age: na
tumor grade: na
cell type: epithelial
|
| Treatment protocol |
none
|
| Growth protocol |
none
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated using the Trizol reagent (Life Technologies) followed by the RNeasy Mini kit (Qiagen).
|
| Label |
Biotin
|
| Label protocol |
Biotin labled cRNA was synthesized from 200 ng total RNA according to standard Affymetrix protocols.
|
| |
|
| Hybridization protocol |
Hybridization to Affymetrix Human Gene 1.0 ST arrays was performed using standard Affymetrix protocols.
|
| Scan protocol |
Arrays were scanned using a GeneChip scanner 3000 and image analysis was performed using the GeneChip Operating Software.
|
| Data processing |
Probe summarization and data normalization were performed using Robust Multi-array Analysis (RMA) with the Expression Console Software v1.1.2.
|
| |
|
| Submission date |
Jun 22, 2020 |
| Last update date |
Aug 02, 2023 |
| Contact name |
Mattias Andersson |
| Organization name |
University of Gothenburg
|
| Department |
Sahlgrenska Cancer Center
|
| Lab |
Stenman
|
| Street address |
Medicinaregatan 1F
|
| City |
Gothenburg |
| ZIP/Postal code |
41390 |
| Country |
Sweden |
| |
|
| Platform ID |
GPL6244 |
| Series (2) |
| GSE153002 |
Integrated copy number and transcriptomic profiling reveal novel oncogenic drivers and clinically significant biomarkers in adenoid cystic carcinoma [Affymetrix] |
| GSE153230 |
Integrated copy number and transcriptomic profiling reveal novel oncogenic drivers and clinically significant biomarkers in adenoid cystic carcinoma |
|
| Relations |
| Reanalysis of |
GSM2348320 |
