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Sample GSM467959 Query DataSets for GSM467959
Status Public on Jun 30, 2011
Title OsPDCD-3A5C
Sample type RNA
 
Channel 1
Source name 24-day-old Zhonghua 11 seedlings, untreated
Organism Oryza sativa
Characteristics age: 24-day-old seedlings
cultivar: Zhonghua 11
Biomaterial provider F.Sun
Growth protocol seedlings were grown in half-strength Murashige and Skoog medium under a 16/8 h light/dark cycle at 26°C
Extracted molecule total RNA
Extraction protocol QIAGEN RNeasy® Mini Kit
Label Cy3
Label protocol Low RNA inout Lineat Amplification/Labeling Kit (Agilent)
 
Channel 2
Source name 24-day-old Zhonghua 11 seedlings, heat-shocked
Organism Oryza sativa
Characteristics age: 24-day-old seedlings
cultivar: Zhonghua 11
Biomaterial provider F.Sun
Growth protocol seedlings were grown in half-strength Murashige and Skoog medium under a 16/8 h light/dark cycle at 26°C, heat-shocked for 6 h
Extracted molecule total RNA
Extraction protocol QIAGEN RNeasy® Mini Kit
Label Cy5
Label protocol Low RNA inout Lineat Amplification/Labeling Kit (Agilent)
 
 
Hybridization protocol Agilent protocol G4140-90040
Scan protocol Agilent Technologies Scanner G2505C
Description 4µg RNAs were labeled and 1µg of Cy3- and Cy5-labeled cRNAs were used.
Data processing Data was analyzed by Feature Extraction software (Agilent)
 
Submission date Nov 04, 2009
Last update date Jun 30, 2011
Contact name Fan Sun
E-mail(s) sunfansfw@gmail.com
Phone +8602165643715
Fax +8602165643715
Organization name Fudan University
Street address 220 Handan Road
City Shanghai
ZIP/Postal code 200433
Country China
 
Platform ID GPL8852
Series (1)
GSE18900 Investigating the role of OsPDCD5 in rice programmed cell death by inducible expression

Data table header descriptions
ID_REF
VALUE log2 ratio (heat-shocked/untreated)
flags flags
INV_VALUE Log2Ratio(Cy3 vs Cy5)

Data table
ID_REF VALUE flags INV_VALUE
Os01g0532600|mRNA|AJ491820|CDS+3'UTR -0.462666 P 0.462666
Os01g0721700|COMBINER_EST|CI557169|4 1.53031 P -1.5303146
Os06g0215600|mRNA|AK104039|CDS+3'UTR 0.688353 P -0.6883531
Os09g0379500|mRNA|AK069390|CDS+3'UTR 0.0534539 A -0.053453933
Os03g0199100|mRNA|AK069890|CDS+3'UTR -0.977429 P 0.97742933
Os01g0508500|mRNA|AK120501|CDS+3'UTR -0.683332 P 0.6833324
Os06g0130000|mRNA|AK064427|CDS+3'UTR -0.144723 P 0.1447228
Os08g0446400|mRNA|AK102368|5'UTR+CDS -1.60711 A 1.6071136
Os05g0433800|COMBINER_EST|Os05g0433800|8 0.89936 A -0.8993603
Os12g0152700|mRNA|AK099473|CDS+3'UTR 0.606614 P -0.606614
Os03g0685100|mRNA|AK059852|CDS+3'UTR 1.11252 P -1.1125163
Os05g0285900|mRNA|AK061533|CDS+3'UTR -0.112377 P 0.1123773
Os03g0449000|COMBINER|CI260116|6 3.6825 P -3.6824954
Os03g0775000|COMBINER_EST|AU057613|7 -0.797768 P 0.7977676
Os11g0213500|COMBINER_EST|Os11g0213500|8 0.17455 A -0.17455049
Os09g0261100|mRNA|AK121607|CDS+3'UTR -0.0267353 P 0.026735334
Os02g0236600|COMBINER_EST|CI552267|0 -2.56843 P 2.568428
Os10g0469200|mRNA|AK108708|CDS+3'UTR 0.126686 P -0.12668562
Os02g0827200|mRNA|AY137242|CDS+3'UTR -0.535498 P 0.5354977
Os09g0271000|mRNA|AK102955|CDS+3'UTR 0.08879 A -0.088789985

Total number of rows: 42475

Table truncated, full table size 2440 Kbytes.




Supplementary file Size Download File type/resource
GSM467959.txt.gz 14.4 Mb (ftp)(http) TXT
Processed data included within Sample table
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