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Status
Public on Aug 10, 2005
Title
Phage 2972-2nd exp-27 min
Sample type
RNA
Channel 1 Source name
Streptococcus thermophilus non-infected cell sample
Organism
Brussowvirus bv2972 Extracted molecule
total RNA
Channel 2 Source name
Streptococcus thermophilus infected cell sample at 27 min post infection
Organism
Brussowvirus bv2972 Extracted molecule
total RNA
Description
Custom microarray developed to study the gene expression of two S. thermophilus phages (DT1 and 2972) during infection. Gene expression was measured at nine time intervals (0, 2, 7, 12, 17, 22, 27, 32, 37 minutes) during phage infection. Non infected sample were compared to the infected sample at a specific time point.
Submission date
Apr 03, 2005
Last update date
Aug 10, 2005
Contact name
Sylvain Moineau
E-mail(s)
martin.duplessis.1@ulaval.ca Phone
418 656-2131 ext 4236
Organization name
Université Laval
Department
Biochemistry and microbiology
Lab
Sylvain Moineau
Street address
City
Québec
State/province
Québec
ZIP/Postal code
G1K7P4
Country
Canada
Platform ID
GPL1939 Series (1)
GSE2476 Phages DT1 and 2972 gene expression study
Data table header descriptions ID_REF
VALUE Log2 transformed normalized CH2/CH1 ratio
CH1_Norm_BackSubtr Normalized intensity value from non-infected sample
CH2_Norm_BackSubtr Normalized intensity value from infected sample (27 min post infection)
Data table ID_REF VALUE CH1_Norm_BackSubtr CH2_Norm_BackSubtr 1
-0.082968756
464.785347
438.8098257
2
-0.098932974
413.894951
386.4633693
3
0.335529538
410.713257
518.2546131
4
0.672830155
218.675972
348.6126356
5
-0.244373844
289.964412
244.7827683
6
0.605080208
191.214065
290.8486997
7
0.011555854
234.863201
236.751988
8
-0.093547428
282.766671
265.0132799
9
0.922325917
156.216118
296.0558235
10
-0.321229448
295.698319
236.6732401
11
0.258417952
286.357483
342.5311648
12
0.539323513
228.449501
332.0035814
13
0.026519612
269.325187
274.3217033
14
-0.412324334
252.597114
189.8044506
15
0.36583841
215.288055
277.4267085
16
0.191805475
377.878067
431.6093919
17
-0.102895467
322.438103
300.2422012
18
-0.127583745
413.497695
378.5005882
19
1.02018743
186.71524
378.6925706
20
0.118895656
273.26329
296.7375124
279 10 Kbytes .Supplementary data files not provided
