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GEO accession:
Sample GSM4736431
Query DataSets for GSM4736431
Status
Public on Jul 24, 2021
Title
2N: normal buccal mucosa
Sample type
genomic
Source name
normal mucosa
Organism
Homo sapiens
Characteristics
tissue: normal buccal mucosa
Extracted molecule
genomic DNA
Extraction protocol
Samples extracted using Qiagen Genomic DNA Kit according to manufacturer's instructions.
Label
Cy5 and Cy3
Label protocol
Not provided
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol
Not provided
Data processing
Average Beta
Submission date
Aug 22, 2020
Last update date
Jul 24, 2021
Contact name
Ruchi Jain
E-mail(s)
jainn.ruchi@gmail.com
Organization name
Indian Institute of Science
Department
Molecular Reproduction Development and Genetics
Lab
Prof. P Kondaiah lab
Street address
C V Raman Road
City
Bangalore
State/province
Karnataka
ZIP/Postal code
560012
Country
India
Platform ID
GPL13534
Series (1)
GSE156669
Novel epigenetically dysregulated genes in Oral Submucous Fibrosis
Data table header descriptions
ID_REF
VALUE
Average Beta
2N.Detection Pval
Data table
ID_REF
VALUE
2N.Detection Pval
cg00000029
0.533912
0
cg00000108
0.9026648
0
cg00000109
0.7969169
0
cg00000165
0.2905183
0
cg00000236
0.8108009
0
cg00000289
0.6152927
0
cg00000292
0.6293281
0
cg00000321
0.4706752
0
cg00000363
0.4116959
0
cg00000622
0.04097871
0
cg00000658
0.7875084
0
cg00000714
0.2166715
0
cg00000721
0.8404787
0
cg00000734
0.1372077
0
cg00000769
0.05435702
0
cg00000807
0.7413709
0
cg00000884
0.7963954
0
cg00000905
0.1340697
0
cg00000924
0.514316
0
cg00000948
0.8298305
0
Total number of rows:
485577
Table truncated, full table size
10925 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM4736431_3998567025_R02C01_Grn.idat.gz
4.0 Mb
(ftp)
(http)
IDAT
GSM4736431_3998567025_R02C01_Red.idat.gz
4.0 Mb
(ftp)
(http)
IDAT
Processed data included within Sample table
Processed data are available on Series record
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