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Sample GSM4736439 Query DataSets for GSM4736439
Status Public on Jul 24, 2021
Title 5OSF: Oral Submucous fibrosis
Sample type genomic
 
Source name OSF
Organism Homo sapiens
Characteristics tissue: Oral Submucous fibrosis
Extracted molecule genomic DNA
Extraction protocol Samples extracted using Qiagen Genomic DNA Kit according to manufacturer's instructions.
Label Cy5 and Cy3
Label protocol Not provided
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Not provided
Data processing Average Beta
 
Submission date Aug 22, 2020
Last update date Jul 24, 2021
Contact name Ruchi Jain
E-mail(s) jainn.ruchi@gmail.com
Organization name Indian Institute of Science
Department Molecular Reproduction Development and Genetics
Lab Prof. P Kondaiah lab
Street address C V Raman Road
City Bangalore
State/province Karnataka
ZIP/Postal code 560012
Country India
 
Platform ID GPL13534
Series (1)
GSE156669 Novel epigenetically dysregulated genes in Oral Submucous Fibrosis

Data table header descriptions
ID_REF
VALUE Average Beta
5OSF.Detection Pval

Data table
ID_REF VALUE 5OSF.Detection Pval
cg00000029 0.5273133 0
cg00000108 0.9009264 0
cg00000109 0.82445 0
cg00000165 0.321092 0
cg00000236 0.8331921 0
cg00000289 0.6904605 0
cg00000292 0.7685928 0
cg00000321 0.4568784 0
cg00000363 0.3744543 0
cg00000622 0.03119753 0
cg00000658 0.8270903 0
cg00000714 0.2347332 0
cg00000721 0.8935663 0
cg00000734 0.1849633 0
cg00000769 0.06752037 0
cg00000807 0.813867 0
cg00000884 0.8309145 0
cg00000905 0.1675774 0
cg00000924 0.6033278 0
cg00000948 0.8983797 0

Total number of rows: 485577

Table truncated, full table size 10922 Kbytes.




Supplementary file Size Download File type/resource
GSM4736439_3998567025_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM4736439_3998567025_R04C02_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table
Processed data are available on Series record

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