|
| Status |
Public on Sep 01, 2021 |
| Title |
PCI05_indolent prostate cancer tissue |
| Sample type |
genomic |
| |
|
| Source name |
prostate tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: prostate tissue
tissue preparation: FFPE
disease state: indolent prostate cancer tissue
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted Qiagen DNA FFPE Tissue Kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
|
| Scan protocol |
samples were scanned using na Illumina BeadArrayTM reader
|
| Data processing |
.idat files were quality filtered and converted to beta values using the minfi R package. Normalization method = FunNorm
|
| |
|
| Submission date |
Sep 01, 2020 |
| Last update date |
Sep 01, 2021 |
| Contact name |
Antoinette Perry |
| E-mail(s) |
antoinette.perry@ucd.ie
|
| Organization name |
University College Dublin
|
| Street address |
Science West, University College Dublin, Belfield, Dublin, Ireland
|
| City |
Dublin |
| ZIP/Postal code |
D4 |
| Country |
Ireland |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE157272 |
DNA methylation profiling across six histological states of prostate cancer |
|
