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Sample GSM47953

Query DataSets for GSM47953

Status

Public on Jul 28, 2005

Title

PA Obese M 6 subB

Sample type

RNA

Source name

Primary cultured abdominal subcutaneous preadipocytes

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Source of cells: Subcutaneous abdominal fat needle biopsies were obtained from non-diabetic Pima Indians . Preadipocytes (stromal vascular cells) were obtained from collagenase digested adipose tissue from the infranatant after fat cells (adipocytes) were allowed to float to the top. The stromal vascular cells were cultured until subconfluency and RNA extracted from the harvested cells. Array type: Affymetrix HG-U133B. Subject: Obese male (PA-OM6)
Keywords = Obesity
Keywords = inflammation
Keywords = microarray
Keywords = gene expression
Keywords = preadipocyte
Keywords = stromal-vascular cells
Keywords = adipose tissue

Submission date

Apr 08, 2005

Last update date

Jul 28, 2005

Contact name

Saraswathy Nair

E-mail(s)

snair@mail.nih.gov

Phone

602-200-5361

Fax

602-200-5335

Organization name

NIDDK, NIH

Department

Phoenix Epidemiology and Clinical Research Branch

Lab

Clinical Diabetes and Nutrition Section

Street address

4212 N. 16th Street

City

Phoenix

State/province

ZIP/Postal code

85016

Country

USA

Platform ID

GPL97

Series (1)

GSE2510

Expression profiling in preadipocytes in obese Pima Indians/humans

Data table header descriptions
ID_REF
VALUE	'signal' a measure of the abundance of a transcript
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
200000_s_at	8212.4	P	0.000244
200001_at	89750.8	P	0.001221
200002_at	108136.4	P	0.000244
200003_s_at	233990.9	P	0.000244
200004_at	103417.8	P	0.000244
200005_at	39268.8	P	0.000244
200006_at	109565.1	P	0.000244
200007_at	105168	P	0.000244
200008_s_at	23590.3	P	0.001953
200009_at	56975.1	P	0.000244
200010_at	115044.5	P	0.000244
200011_s_at	21845.3	P	0.001953
200012_x_at	171380.4	P	0.000244
200013_at	152482.7	P	0.000244
200014_s_at	24047.6	P	0.000244
200015_s_at	70391.5	P	0.000732
200016_x_at	138014.2	P	0.000244
200017_at	190045.1	P	0.000244
200018_at	180647.2	P	0.000244
200019_s_at	91255.6	P	0.000244

Total number of rows: 22645

Table truncated, full table size 609 Kbytes.

Supplementary data files not provided