|
| Status |
Public on Oct 01, 2021 |
| Title |
primary melanocyte C74 |
| Sample type |
genomic |
| |
|
| Source name |
Primary cultured melanocytes
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Male
sample type: genomic
cell type: melanocytes
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from 106 samples using Gentra Puregene Cell Kit (158745, Qiagen)
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Feb 03, 2021 |
| Last update date |
Oct 01, 2021 |
| Contact name |
Kevin M Brown |
| Organization name |
National Cancer Institute
|
| Department |
Division of Cancer Epidemiology & Genetics
|
| Lab |
Laboratory of Translational Genomics
|
| Street address |
8717 Grovemont Circle
|
| City |
Gaithersburg |
| State/province |
MD |
| ZIP/Postal code |
20877 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE166069 |
Cell-type specific meQTL extends melanoma GWAS annotation beyond eQTL and identifies a melanocyte gene regulatory network |
| GSE166102 |
Cell-type specific multi-QTL analyses of cultured human primary melanocytes |
|
