|
Status |
Public on Oct 01, 2021 |
Title |
primary melanocyte C87 |
Sample type |
genomic |
|
|
Source name |
Primary cultured melanocytes
|
Organism |
Homo sapiens |
Characteristics |
gender: Male sample type: genomic cell type: melanocytes
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from 106 samples using Gentra Puregene Cell Kit (158745, Qiagen)
|
Label |
Cy3, Cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Data processing |
BeadStudio software v3.2
|
|
|
Submission date |
Feb 03, 2021 |
Last update date |
Oct 01, 2021 |
Contact name |
Kevin M Brown |
Organization name |
National Cancer Institute
|
Department |
Division of Cancer Epidemiology & Genetics
|
Lab |
Laboratory of Translational Genomics
|
Street address |
8717 Grovemont Circle
|
City |
Gaithersburg |
State/province |
MD |
ZIP/Postal code |
20877 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE166069 |
Cell-type specific meQTL extends melanoma GWAS annotation beyond eQTL and identifies a melanocyte gene regulatory network |
GSE166102 |
Cell-type specific multi-QTL analyses of cultured human primary melanocytes |
|