|
| Status |
Public on Jun 01, 2021 |
| Title |
L_As2 |
| Sample type |
SRA |
| |
|
| Source name |
Lung tissue
|
| Organism |
Sus scrofa |
| Characteristics |
breed: Danish Landrace x yorkshire
tissue: lung
infection status: infected with Ascaris suum
diet: control
|
| Growth protocol |
Pigs (aged 10 weeks) were infected with 5000 A. summ eggs or left as controls, and killed 14 days post-infection. Dietary treatments were for 28 days, 14 days pre- and 14 days post-infection
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Tissue was collected at euthanasia. Total RNA was extracted using miRNAeasy kits (Qiagen).
Standard Illumina
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
L_As2
|
| Data processing |
Adaptor sequences and low quality reads removed
Mapped to Sus Scrofa (ss11.1) using HISAT
DEG assessed using DeSeq2
Genome_build: ss11.1
Supplementary_files_format_and_content: excel file with count data for each sample.
|
| |
|
| Submission date |
Mar 12, 2021 |
| Last update date |
Jun 01, 2021 |
| Contact name |
Andrew Williams |
| E-mail(s) |
arw@sund.ku.dk
|
| Phone |
31383122
|
| Organization name |
University of Copenhagen
|
| Street address |
Dyrlægevej 100
|
| City |
Frederiksberg C |
| State/province |
--- Select One --- |
| ZIP/Postal code |
DK-1870 |
| Country |
Denmark |
| |
|
| Platform ID |
GPL26351 |
| Series (1) |
| GSE168840 |
RNA-sequencing data of lung tissue of pigs infected with parasites and adminstered proanthocyanidins (PAC) |
|
| Relations |
| BioSample |
SAMN18290313 |
| SRA |
SRX10335508 |
