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Sample GSM531143 Query DataSets for GSM531143
Status Public on Apr 08, 2010
Title Dominican 4
Sample type genomic
 
Source name NYHP
Organism Homo sapiens
Characteristics gender: Male
tissue: Peripheral blood
disease state: Healthy control
Extracted molecule genomic DNA
Extraction protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Scan protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Description sample id: D0010729
Data processing Genotyped using Illumina 610-Quad Genotyping BeadChips, which use the SNPs on the 550-v3 Genotyping BeadChip plus an additional 60,000 SNPs for CNV not analyzed in present study. See illumina.com
 
Submission date Apr 07, 2010
Last update date Apr 07, 2010
Contact name Harry Ostrer
E-mail(s) harry.ostrer@nyumc.org
Phone 212-263-5746
Fax 212-263-3477
Organization name NYU Langone Medical Center
Department Department of Pediatrics
Lab Human Genetics Program
Street address 550 First Avenue, MSB 136
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platform ID GPL8887
Series (1)
GSE21248 Genome-wide Patterns of Population Structure and Admixture among Hispanic/Latino Populations

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
D0010729.Score
D0010729.Theta
D0010729.R
D0010729.B Allele Freq
D0010729.Log R Ratio

Data table
ID_REF VALUE D0010729.Score D0010729.Theta D0010729.R D0010729.B Allele Freq D0010729.Log R Ratio
200003 AA 0.9299463 0.02928711 0.8578662 0.002848264 -0.3852402
200006 AB 0.787675 0.406921 2.093865 0.4397199 -0.03440813
200047 AB 0.8612435 0.3791781 0.3190647 0.5144894 -0.5335513
200050 AB 0.8331156 0.4185009 2.054968 0.4713905 0.1433736
200052 BB 0.9466458 0.9912831 0.8875234 1 -0.06388321
200053 AA 0.7493879 0.07897186 1.284416 0 0.2191595
200070 AB 0.9705294 0.4927895 0.5095373 0.4945271 -0.03573379
200078 BB 0.6531293 0.9501396 1.888128 1 0.01785539
200087 AA 0.9078211 0.04232097 0.747299 0.003997026 -0.4691954
200091 AB 0.8204677 0.4789287 2.087266 0.4630359 -0.001039494
200096 BB 0.9354096 0.9693365 0.7997372 1 -0.2564781
200124 BB 0.8902165 0.9807356 0.9654163 1 0.08169603
200199 BB 0.9598788 1 0.6907035 1 -0.01342758
200240 AB 0.8782917 0.4563636 1.639399 0.5009013 0.05119184
200251 AB 0.9409742 0.5325192 1.25261 0.4951181 -0.03423377
200258 AA 0.7451698 0.03870294 1.352672 0 -0.2996766
200260 BB 0.7948331 0.9998028 1.185865 1 -0.113515
200261 AB 0.8794336 0.5475054 1.170784 0.4955832 -0.3272638
200262 AA 0.9256892 0.02194966 0.580456 0.009128707 -0.1587829
200519 AA 0.8716854 0.00298786 1.664986 0 -0.009404414

Total number of rows: 620901

Table truncated, full table size 35920 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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