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Sample GSM531158 Query DataSets for GSM531158
Status Public on Apr 08, 2010
Title Dominican 19
Sample type genomic
 
Source name NYHP
Organism Homo sapiens
Characteristics gender: Male
tissue: Peripheral blood
disease state: Healthy control
Extracted molecule genomic DNA
Extraction protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Scan protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Description sample id: D0011034
Data processing Genotyped using Illumina 610-Quad Genotyping BeadChips, which use the SNPs on the 550-v3 Genotyping BeadChip plus an additional 60,000 SNPs for CNV not analyzed in present study. See illumina.com
 
Submission date Apr 07, 2010
Last update date Apr 07, 2010
Contact name Harry Ostrer
E-mail(s) harry.ostrer@nyumc.org
Phone 212-263-5746
Fax 212-263-3477
Organization name NYU Langone Medical Center
Department Department of Pediatrics
Lab Human Genetics Program
Street address 550 First Avenue, MSB 136
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platform ID GPL8887
Series (1)
GSE21248 Genome-wide Patterns of Population Structure and Admixture among Hispanic/Latino Populations

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
D0011034.Score
D0011034.Theta
D0011034.R
D0011034.B Allele Freq
D0011034.Log R Ratio

Data table
ID_REF VALUE D0011034.Score D0011034.Theta D0011034.R D0011034.B Allele Freq D0011034.Log R Ratio
200003 AA 0.9299463 0.01744739 1.149274 0 0.04341951
200006 AB 0.787675 0.4564859 1.869099 0.5005819 -0.2261831
200047 AA 0.8612435 0.04115208 0.3833176 0 -0.4504125
200050 BB 0.8331156 0.9895287 1.187743 0.9959064 -0.03705326
200052 BB 0.9466458 0.9853289 0.9185076 0.996261 -0.01776876
200053 AA 0.7493879 0.08121424 1.22695 0 0.1521711
200070 AA 0.9705294 0.005733251 0.524976 0.003623254 0.1146318
200078 BB 0.6531293 0.9501535 2.047454 1 0.1347445
200087 BB 0.9078211 0.9837936 1.006757 1 -0.101941
200091 AA 0.8204677 0.01791835 1.652178 0 0.01710625
200096 BB 0.9354096 0.9621062 0.8084871 1 -0.2469118
200124 BB 0.8902165 0.9682227 0.9129423 0.9953861 -0.003985867
200199 BB 0.9598788 1 0.6374245 1 -0.1292395
200240 AA 0.8782917 0.01701373 1.343318 0 0.005761251
200251 BB 0.9409742 0.9840216 1.00587 0.9984751 -0.06815356
200258 AA 0.7451698 0.03596619 1.646663 0 -0.01398631
200260 AB 0.7948331 0.7917967 1.179352 0.5812513 -0.03722938
200261 BB 0.8794336 0.9741106 1.227112 1 0.03485369
200262 AB 0.9256892 0.4279539 0.6232578 0.4661314 -0.2307882
200519 AB 0.8716854 0.4980141 2.073765 0.5068293 -0.05876537

Total number of rows: 620901

Table truncated, full table size 35696 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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