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Sample GSM531182 Query DataSets for GSM531182
Status Public on Apr 08, 2010
Title Ecuadorian 16
Sample type genomic
 
Source name NYHP
Organism Homo sapiens
Characteristics gender: Male
tissue: Peripheral blood
disease state: Healthy control
Extracted molecule genomic DNA
Extraction protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Scan protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Description sample id: D0019481
Data processing Genotyped using Illumina 610-Quad Genotyping BeadChips, which use the SNPs on the 550-v3 Genotyping BeadChip plus an additional 60,000 SNPs for CNV not analyzed in present study. See illumina.com
 
Submission date Apr 07, 2010
Last update date Apr 07, 2010
Contact name Harry Ostrer
E-mail(s) harry.ostrer@nyumc.org
Phone 212-263-5746
Fax 212-263-3477
Organization name NYU Langone Medical Center
Department Department of Pediatrics
Lab Human Genetics Program
Street address 550 First Avenue, MSB 136
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platform ID GPL8887
Series (1)
GSE21248 Genome-wide Patterns of Population Structure and Admixture among Hispanic/Latino Populations

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
D0019481.Score
D0019481.Theta
D0019481.R
D0019481.B Allele Freq
D0019481.Log R Ratio

Data table
ID_REF VALUE D0019481.Score D0019481.Theta D0019481.R D0019481.B Allele Freq D0019481.Log R Ratio
200003 AB 0.9299463 0.4251973 1.231627 0.4866441 -0.07306658
200006 AB 0.787675 0.4509705 1.805211 0.4939594 -0.2739919
200047 AA 0.8612435 0.04425598 0.5023718 0 -0.05865153
200050 BB 0.8331156 0.9935971 1.344484 0.9996034 0.1476009
200052 BB 0.9466458 0.9931625 0.9146374 1 -0.01939616
200053 AA 0.7493879 0.09616233 1.138765 0.01911366 0.03824017
200070 AA 0.9705294 0 0.384398 0 -0.333707
200078 BB 0.6531293 0.9419595 1.632665 1 -0.2003099
200087 AB 0.9078211 0.5519516 1.034805 0.5042162 -0.3319949
200091 AB 0.8204677 0.5222519 2.137228 0.507465 0.01363703
200096 AB 0.9354096 0.4780776 1.110263 0.5242963 -0.1498922
200124 BB 0.8902165 0.9762277 0.9166509 1 0.005094237
200199 BB 0.9598788 1 0.677669 1 -0.04091321
200240 AA 0.8782917 0.04264241 1.352007 0.01769588 -0.0003167408
200251 AA 0.9409742 0.01064186 0.9526159 0 -0.06052956
200258 AA 0.7451698 0.042112 1.57803 0 -0.07979655
200260 AB 0.7948331 0.7384151 1.088618 0.4908495 -0.1230501
200261 AB 0.8794336 0.5577671 1.449164 0.5070364 -0.01819
200262 AB 0.9256892 0.4654401 0.600613 0.5071287 -0.2925927
200519 AA 0.8716854 0.005388401 1.698582 0 0.01733346

Total number of rows: 620901

Table truncated, full table size 36516 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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