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Sample GSM531213 Query DataSets for GSM531213
Status Public on Apr 08, 2010
Title Puerto Rican 27
Sample type genomic
 
Source name NYHP
Organism Homo sapiens
Characteristics gender: Male
tissue: Peripheral blood
disease state: Healthy control
Extracted molecule genomic DNA
Extraction protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Label biotin
Label protocol standard Illumina protocol
 
Hybridization protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Scan protocol Extraction of DNA from peripheral blood at North Shore - Long Island Jewish, following standard Illumina labeling, hybridization, scanning, and genotype protocol. See illumina.com
Description sample id: D0022087
Data processing Genotyped using Illumina 610-Quad Genotyping BeadChips, which use the SNPs on the 550-v3 Genotyping BeadChip plus an additional 60,000 SNPs for CNV not analyzed in present study. See illumina.com
 
Submission date Apr 07, 2010
Last update date Apr 07, 2010
Contact name Harry Ostrer
E-mail(s) harry.ostrer@nyumc.org
Phone 212-263-5746
Fax 212-263-3477
Organization name NYU Langone Medical Center
Department Department of Pediatrics
Lab Human Genetics Program
Street address 550 First Avenue, MSB 136
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platform ID GPL8887
Series (1)
GSE21248 Genome-wide Patterns of Population Structure and Admixture among Hispanic/Latino Populations

Data table header descriptions
ID_REF
VALUE Genotype: AA,AB,BB,or NC (no call)
D0022087.Score
D0022087.Theta
D0022087.R
D0022087.B Allele Freq
D0022087.Log R Ratio

Data table
ID_REF VALUE D0022087.Score D0022087.Theta D0022087.R D0022087.B Allele Freq D0022087.Log R Ratio
200003 AA 0.9299463 0.02361965 1.01349 0 -0.1414999
200006 BB 0.787675 0.9813429 1.413447 1 -0.1725336
200047 AA 0.8612435 0.06003722 0.4542879 0.01663361 -0.1959161
200050 BB 0.8331156 0.9923243 1.165069 0.9984468 -0.06086086
200052 BB 0.9466458 0.986906 0.8370216 0.9980973 -0.1508979
200053 AA 0.7493879 0.07667356 1.213302 0 0.1379603
200070 AA 0.9705294 0 0.4650505 0 -0.05892023
200078 AB 0.6531293 0.505046 2.118815 0.477138 -0.1759168
200087 AA 0.9078211 0.0484859 0.9113025 0.01003997 -0.1875296
200091 AA 0.8204677 0.01750852 1.733655 0 0.08691191
200096 BB 0.9354096 0.9691446 0.8666003 1 -0.1408004
200124 AB 0.8902165 0.6528686 0.96896 0.5475346 -0.03993769
200199 BB 0.9598788 1 0.5743716 1 -0.2795096
200240 AA 0.8782917 0.022518 1.397714 0 0.05971248
200251 AB 0.9409742 0.5580522 1.239302 0.5227829 -0.04094055
200258 AA 0.7451698 0.04168095 1.352191 0 -0.3023146
200260 BB 0.7948331 1 1.03628 1 -0.3081183
200261 AB 0.8794336 0.5543758 1.323621 0.5030085 -0.151079
200262 AB 0.9256892 0.5077328 0.6965605 0.5478865 -0.05727745
200519 AA 0.8716854 0.003539472 1.767605 0 0.07640233

Total number of rows: 620901

Table truncated, full table size 36203 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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