|
| Status |
Public on Jun 23, 2010 |
| Title |
pCR breast biopsy, sample 16 rep 1 |
| Sample type |
RNA |
| |
|
| Source name |
breast needle biopsy, pretreatment, sample 16 rep 1
|
| Organism |
Homo sapiens |
| Characteristics |
pathological complete response: yes
tissue: Breast tumor biopsy
|
| Treatment protocol |
all samples are from pretreatment patients
|
| Growth protocol |
all samples are from frozen primary breast needle biopsies
|
| Extracted molecule |
total RNA |
| Extraction protocol |
frozen biopsies were sectioned, laser capture microdissected for invasive tumor cells, and total RNA was isolated according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol
|
| Description |
Gene expression data from pretreatment breast needle biopsies
|
| Data processing |
The data were analyzed for differentially expressed probes between responder and non-responder patient tumor samples. Data was RMA summarized, quantile normalized and baseline transformed to the median of all samples using GeneSpring GX Software (Agilent).
|
| |
|
| Submission date |
Jun 22, 2010 |
| Last update date |
Jun 22, 2010 |
| Contact name |
Jennifer Pietenpol |
| E-mail(s) |
j.pietenpol@vanderbilt.edu
|
| Organization name |
Vanderbilt University Medical Center
|
| Street address |
652 Preston Research Building, 23rd Avenue South at Pierce
|
| City |
Nashville |
| State/province |
TN |
| ZIP/Postal code |
37232 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE22513 |
Markers of Taxane Sensitivity in Breast Cancer |
|
