|
Status |
Public on Oct 26, 2021 |
Title |
Methylome capture of HG007 using EMSeq [EMSeq_HG007_LAB02_REP01] |
Sample type |
SRA |
|
|
Source name |
Cell line
|
Organism |
Homo sapiens |
Characteristics |
cell line: HG007
|
Extracted molecule |
genomic DNA |
Extraction protocol |
NEB Enzymatic Methyl-Seq DNA (gDNA) was purchased from the Coriell Institute for Medical Research
|
|
|
Library strategy |
OTHER |
Library source |
genomic |
Library selection |
other |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Description |
Whole Genome Enzymatic Deamination
|
Data processing |
Library strategy: enzymatic deamination sequencing Base-calling software: RTA v3.4.4 Adapter trimming: fastp v0.20.1 Alignment: bwa-meth v02.1 Sorting and indexing: sambamba Duplicate marking: Picard MarkDuplicates v2.10.10-SNAPSHOT Methylation calling: MethylDackel v0.3.0-3-g084d926 Genome_build: genome build: GRCh38 Supplementary_files_format_and_content: Bedgraph
|
|
|
Submission date |
Oct 22, 2021 |
Last update date |
Oct 26, 2021 |
Contact name |
Jessica Nordlund |
Organization name |
Uppsala University
|
Department |
Department of Medical Sciences
|
Lab |
Molecular Precision Medicine
|
Street address |
Box 1432, BMC
|
City |
Uppsala |
ZIP/Postal code |
SE-75144 |
Country |
Sweden |
|
|
Platform ID |
GPL24676 |
Series (1) |
GSE186383 |
The SEQC2 epigenomics quality control (EpiQC) study |
|
Relations |
BioSample |
SAMN16727318 |
SRA |
SRX9500607 |
SRA |
SRX9500605 |
SRA |
SRX9500604 |