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Sample GSM605858 Query DataSets for GSM605858
Status Public on Oct 08, 2010
Title MF.Thio5.II+480int.PC#3
Sample type RNA
 
Source name Peritoneal Cavity
Organism Mus musculus
Characteristics age: 8 weeks
genetic background: C57BL/6J
phenotype markers: CD115+ MHC II+ F480lo SiglecF- CD11c+
separation method: dissection/trimming
Sex: male
Extracted molecule total RNA
Extraction protocol Peritoneal Lavage
Label Biotin
Label protocol Affy GeneChip WT cDNA Synthesis kit/cRNA Cleanup kit
 
Hybridization protocol Affy 1.0 ST Hyb Kit
Scan protocol Affymetrix GeneChip Scanner
Description MF.Thio5.II+480int.PC#3
Data processing The datasets were pre-filtered to keep only those probesets for which a gene symbol could be found in the Affymetrix annotation. CEL files were normalized using Affymetrix Power Tools on the predefined probeset ID list mentioned above, and using the standard RMA workflow (background adjustment, quantile normalization, median polish probeset summarization). Output on 2^ scale.
 
Submission date Oct 07, 2010
Last update date May 24, 2016
Contact name Liang Yang
Organization name Harvard Medical School
Department Pathology
Lab CBDM
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL6246
Series (1)
GSE15907 ImmGen Microarray Phase 1

Data table header descriptions
ID_REF
VALUE RMA normalized signal intensity

Data table
ID_REF VALUE
10344620 16.9342
10344622 265.3355
10344624 708.279
10344633 832.408
10344637 386.6008
10344653 17.2824
10344658 338.7317
10344674 8.4495
10344679 65.8926
10344707 363.7351
10344713 307.2273
10344723 194.1383
10344725 45.5655
10344741 1937.8682
10344743 22.6488
10344750 987.8556
10344772 28.421
10344789 186.0623
10344797 223.7499
10344799 185.0605

Total number of rows: 24922

Table truncated, full table size 422 Kbytes.




Supplementary file Size Download File type/resource
GSM605858_EA07068_105235_MoGene_MF.THIO5.II+480INT.PC#3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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