|
Status |
Public on Dec 01, 2022 |
Title |
RNA_CR_124 |
Sample type |
SRA |
|
|
Source name |
Peripheral blood mononuclear cells
|
Organism |
Homo sapiens |
Characteristics |
cell type: Peripheral blood mononuclear cells age: 26 gender: M
|
Extracted molecule |
total RNA |
Extraction protocol |
PBMCs were isolated from whole blood using histopaque. RNA libraries were constructed using standard Illumina protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Description |
rna_counts_011622.csv
|
Data processing |
Alignment: STAR aligner (v2.7.9a) with '--sjdbOverhang 100'. Counting: featureCounts, Subread package (v2.0.3). Assembly: GRCh38 Supplementary files format and content: Raw matrix table representing the number of transcripts per gene
|
|
|
Submission date |
May 03, 2022 |
Last update date |
Dec 01, 2022 |
Contact name |
kevin perez |
E-mail(s) |
kgi.perez@gmail.com
|
Organization name |
University of Lausanne
|
Street address |
rue du Bugnon 27
|
City |
Lausanne |
ZIP/Postal code |
1005 |
Country |
Switzerland |
|
|
Platform ID |
GPL24676 |
Series (2) |
GSE193141 |
Development of a novel aging clock based on chromatin accessibility [RNA-seq] |
GSE193142 |
Development of a novel aging clock based on chromatin accessibility |
|
Relations |
BioSample |
SAMN28064517 |
SRA |
SRX15139580 |