|
| Status |
Public on Dec 01, 2022 |
| Title |
RNA_CR_136 |
| Sample type |
SRA |
| |
|
| Source name |
Peripheral blood mononuclear cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Peripheral blood mononuclear cells
age: 37
gender: M
|
| Extracted molecule |
total RNA |
| Extraction protocol |
PBMCs were isolated from whole blood using histopaque.
RNA libraries were constructed using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
rna_counts_011622.csv
|
| Data processing |
Alignment: STAR aligner (v2.7.9a) with '--sjdbOverhang 100'.
Counting: featureCounts, Subread package (v2.0.3).
Assembly: GRCh38
Supplementary files format and content: Raw matrix table representing the number of transcripts per gene
|
| |
|
| Submission date |
May 03, 2022 |
| Last update date |
Dec 01, 2022 |
| Contact name |
kevin perez |
| E-mail(s) |
kgi.perez@gmail.com
|
| Organization name |
University of Lausanne
|
| Street address |
rue du Bugnon 27
|
| City |
Lausanne |
| ZIP/Postal code |
1005 |
| Country |
Switzerland |
| |
|
| Platform ID |
GPL24676 |
| Series (2) |
| GSE193141 |
Development of a novel aging clock based on chromatin accessibility [RNA-seq] |
| GSE193142 |
Development of a novel aging clock based on chromatin accessibility |
|
| Relations |
| BioSample |
SAMN28064505 |
| SRA |
SRX15139592 |
