|
| Status |
Public on Sep 01, 2011 |
| Title |
OSCC tumor_4058T |
| Sample type |
RNA |
| |
|
| Source name |
OSCC specimens
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: tumor
|
| Treatment protocol |
OSCC tissues were surgical dissected and immediately froze in liquid nitrogen until use
|
| Growth protocol |
None
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was isolated from tissue using the Qiagen RNeasy Mini Kit (Qiagen, Germantown, MD, USA) according to the manufacturer’s protocol.
|
| Label |
biotin
|
| Label protocol |
As per manufacturer (Affymetrix)
|
| |
|
| Hybridization protocol |
As per manufacturer (Affymetrix)
|
| Scan protocol |
Affymetrix Gene ChIP Scanner 3000
|
| Description |
patient with OSCC
|
| Data processing |
Data were processed using Partek software. Gene level expression were summarized from the corrected intensities and then quantile normalized.
probe group file: HuEx-1_0-st-v2.r2.pgf
meta-probeset file: HuEx-1_0-st-v2.r2.dt1.hg18.core.mps
|
| |
|
| Submission date |
Nov 03, 2010 |
| Last update date |
Sep 01, 2011 |
| Contact name |
Chien-Hua Peng |
| Organization name |
Chang Gung Memorial Hospital
|
| Street address |
No. 5, Fu-Hsing ST.
|
| City |
Taoyuan |
| ZIP/Postal code |
33305 |
| Country |
Taiwan |
| |
|
| Platform ID |
GPL5175 |
| Series (2) |
| GSE25099 |
Expression data from 57 patients with oral cancer and 22 normal persons |
| GSE25104 |
Expression and SNP array data for oral squamous cell carcinoma |
|
