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GEO accession:
Sample GSM6201
Query DataSets for GSM6201
Status
Public on Sep 12, 2003
Title
m1-adenoma5
Sample type
RNA
Source name
Ileum epithelials cells
Organism
Mus musculus
Extracted molecule
total RNA
Description
Cells captured via Arcturus LCM system, amplified (RiboAmp, 2 rounds) and labeled (Enzo) for hybridizaton to Affymetrix MG_U74Av2 arrays, using manufacturers protocols in each step.
Submission date
Apr 30, 2003
Last update date
Mar 17, 2006
Contact name
Matthew Feldman
E-mail(s)
mfeldman@nd.edu
Phone
574-631-3539
Fax
574-631-4048
Organization name
University of Notre Dame
Department
Chemistry and Biochemistry
Lab
Keck Center for Transgene Research
Street address
251 Nieuwland Science Hall
City
Notre Dame
State/province
IN
ZIP/Postal code
46556
Country
USA
Platform ID
GPL81
Series (1)
GSE422
Epithelium transition profile
Data table header descriptions
ID_REF
Stat_Pairs
Number of probe pairs for a particular probe set
Stat_Pairs_Used
Number of probe pairs per probe set used in the analysis
VALUE
Signal
ABS_CALL
Present or marginal or absent
Detection_p-value
P-value associated with detection call
Data table
ID_REF
Stat_Pairs
Stat_Pairs_Used
VALUE
ABS_CALL
Detection_p-value
AFFX-MurIL2_at
20
20
94.4
A
0.5
AFFX-MurIL10_at
20
20
16.8
A
0.712257
AFFX-MurIL4_at
20
20
27.1
A
0.645547
AFFX-MurFAS_at
20
20
106.4
P
0.013811
AFFX-BioB-5_at
20
20
780.1
P
0.000857
AFFX-BioB-M_at
20
20
1902.5
P
0.000052
AFFX-BioB-3_at
20
20
1141.3
P
0.000052
AFFX-BioC-5_at
20
20
2700.6
P
0.00007
AFFX-BioC-3_at
20
20
1811.3
P
0.000044
AFFX-BioDn-5_at
20
20
2082.6
P
0.000044
AFFX-BioDn-3_at
20
20
6828.5
P
0.000044
AFFX-CreX-5_at
20
20
26352.8
P
0.000044
AFFX-CreX-3_at
20
20
25365.7
P
0.000052
AFFX-BioB-5_st
20
20
55.6
A
0.275146
AFFX-BioB-M_st
20
20
174.3
A
0.123572
AFFX-BioB-3_st
20
20
155.7
A
0.275146
AFFX-BioC-5_st
20
20
20.1
A
0.941556
AFFX-BioC-3_st
20
20
78.4
A
0.287743
AFFX-BioDn-5_st
20
20
387.2
P
0.020022
AFFX-BioDn-3_st
20
20
371.3
P
0.00844
Total number of rows:
12488
Table truncated, full table size
393 Kbytes
.
Supplementary data files not provided
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