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Sample GSM62249 Query DataSets for GSM62249
Status Public on Aug 12, 2005
Title P107 pheochromocytoma
Sample type RNA
 
Source name flash-frozen tumor specimen
Organism Homo sapiens
Characteristics tumor type: pheochromocytoma
genetic class: B_SDHB
tumor location: extraadrenal
Extracted molecule total RNA
Extraction protocol Trizol as described in Monti S et al. Blood. 2005 Mar 1;105(5):1851-61.
Label biotin
Label protocol Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description sample: P107
Data processing Affymetrix Microarray Suite version 5.0 and dChip.
 
Submission date Jun 27, 2005
Last update date Apr 13, 2010
Contact name Patricia L. Dahia
E-mail(s) dahia@uthscsa.edu
Phone 210 5674866
Organization name UTHSCSA
Department Medicine/Cel&Struct Biology
Street address 7703 Floyd Curl Dr MC7880
City San Antonio
State/province TX
ZIP/Postal code 78229
Country USA
 
Platform ID GPL96
Series (2)
GSE2841 Expression Profiling of pheochromocytomas of various genetic origins
GSE19987 Germline Mutations in TMEM127 Confer Susceptibility to Pheochromocytoma

Data table header descriptions
ID_REF probe set
VALUE dChip normalized and modelled signal intensity
ABS_CALL MAS 5.0 Detection Call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 674.096 P
AFFX-BioB-M_at 963.041 P
AFFX-BioB-3_at 841.389 P
AFFX-BioC-5_at 1215.19 P
AFFX-BioC-3_at 1311.34 P
AFFX-BioDn-5_at 1197.29 P
AFFX-BioDn-3_at 3863.04 P
AFFX-CreX-5_at 7385 P
AFFX-CreX-3_at 12057.8 P
AFFX-DapX-5_at 27.851 A
AFFX-DapX-M_at 49.2092 A
AFFX-DapX-3_at 30.5238 A
AFFX-LysX-5_at 30.827 A
AFFX-LysX-M_at 127.424 A
AFFX-LysX-3_at 68.2992 A
AFFX-PheX-5_at 33.2062 A
AFFX-PheX-M_at 49.4785 A
AFFX-PheX-3_at 127.248 A
AFFX-ThrX-5_at 100.928 A
AFFX-ThrX-M_at 21.2303 A

Total number of rows: 22283

Table truncated, full table size 453 Kbytes.




Supplementary file Size Download File type/resource
GSM62249.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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