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Sample GSM62252 Query DataSets for GSM62252
Status Public on Aug 12, 2005
Title P148 pheochromocytoma
Sample type RNA
 
Source name flash-frozen tumor specimen
Organism Homo sapiens
Characteristics tumor type: pheochromocytoma
genetic class: SPOR
tumor location: adrenal
Extracted molecule total RNA
Extraction protocol Trizol as described in Monti S et al. Blood. 2005 Mar 1;105(5):1851-61.
Label biotin
Label protocol Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description sample: P148
Data processing Affymetrix Microarray Suite version 5.0 and dChip.
 
Submission date Jun 27, 2005
Last update date Apr 13, 2010
Contact name Patricia L. Dahia
E-mail(s) dahia@uthscsa.edu
Phone 210 5674866
Organization name UTHSCSA
Department Medicine/Cel&Struct Biology
Street address 7703 Floyd Curl Dr MC7880
City San Antonio
State/province TX
ZIP/Postal code 78229
Country USA
 
Platform ID GPL96
Series (2)
GSE2841 Expression Profiling of pheochromocytomas of various genetic origins
GSE19987 Germline Mutations in TMEM127 Confer Susceptibility to Pheochromocytoma

Data table header descriptions
ID_REF probe set
VALUE dChip normalized and modelled signal intensity
ABS_CALL MAS 5.0 Detection Call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 691.544 P
AFFX-BioB-M_at 899.253 P
AFFX-BioB-3_at 847.2 P
AFFX-BioC-5_at 1360.24 P
AFFX-BioC-3_at 1349.19 P
AFFX-BioDn-5_at 1201.47 P
AFFX-BioDn-3_at 4200.56 P
AFFX-CreX-5_at 7708.24 P
AFFX-CreX-3_at 10683.9 P
AFFX-DapX-5_at 33.3363 A
AFFX-DapX-M_at 54.6226 A
AFFX-DapX-3_at 40.0615 A
AFFX-LysX-5_at 34.815 A
AFFX-LysX-M_at 130.739 A
AFFX-LysX-3_at 61.6785 A
AFFX-PheX-5_at 48.8049 A
AFFX-PheX-M_at 45.6067 A
AFFX-PheX-3_at 140.584 A
AFFX-ThrX-5_at 127.364 A
AFFX-ThrX-M_at 31.6956 A

Total number of rows: 22283

Table truncated, full table size 453 Kbytes.




Supplementary file Size Download File type/resource
GSM62252.CEL.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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