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Sample GSM62256 Query DataSets for GSM62256
Status Public on Aug 12, 2005
Title P182 pheochromocytoma
Sample type RNA
 
Source name flash-frozen tumor specimen
Organism Homo sapiens
Characteristics tumor type: pheochromocytoma
genetic class: MEN2A
tumor location: adrenal
Extracted molecule total RNA
Extraction protocol Trizol as described in Monti S et al. Blood. 2005 Mar 1;105(5):1851-61.
Label biotin
Label protocol Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description sample: P182
Data processing Affymetrix Microarray Suite version 5.0 and dChip.
 
Submission date Jun 27, 2005
Last update date Apr 13, 2010
Contact name Patricia L. Dahia
E-mail(s) dahia@uthscsa.edu
Phone 210 5674866
Organization name UTHSCSA
Department Medicine/Cel&Struct Biology
Street address 7703 Floyd Curl Dr MC7880
City San Antonio
State/province TX
ZIP/Postal code 78229
Country USA
 
Platform ID GPL96
Series (2)
GSE2841 Expression Profiling of pheochromocytomas of various genetic origins
GSE19987 Germline Mutations in TMEM127 Confer Susceptibility to Pheochromocytoma

Data table header descriptions
ID_REF probe set
VALUE dChip normalized and modelled signal intensity
ABS_CALL MAS 5.0 Detection Call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 788.785 P
AFFX-BioB-M_at 1023.47 P
AFFX-BioB-3_at 914.639 P
AFFX-BioC-5_at 1378.98 P
AFFX-BioC-3_at 1403.7 P
AFFX-BioDn-5_at 1244.89 P
AFFX-BioDn-3_at 4361.57 P
AFFX-CreX-5_at 8669.89 P
AFFX-CreX-3_at 11154.1 P
AFFX-DapX-5_at 14.4758 A
AFFX-DapX-M_at 27.6586 A
AFFX-DapX-3_at 21.8566 A
AFFX-LysX-5_at 21.5912 A
AFFX-LysX-M_at 101.086 A
AFFX-LysX-3_at 34.2619 A
AFFX-PheX-5_at 27.6779 A
AFFX-PheX-M_at 17.7887 A
AFFX-PheX-3_at 107.311 A
AFFX-ThrX-5_at 95.9852 A
AFFX-ThrX-M_at 21.3016 A

Total number of rows: 22283

Table truncated, full table size 453 Kbytes.




Supplementary file Size Download File type/resource
GSM62256.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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