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Sample GSM62260 Query DataSets for GSM62260
Status Public on Aug 12, 2005
Title P203 pheochromocytoma
Sample type RNA
 
Source name flash-frozen tumor specimen
Organism Homo sapiens
Characteristics tumor type: pheochromocytoma
genetic class: SPOR
tumor location: adrenal
Extracted molecule total RNA
Extraction protocol Trizol as described in Monti S et al. Blood. 2005 Mar 1;105(5):1851-61.
Label biotin
Label protocol Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description sample: P203
Data processing Affymetrix Microarray Suite version 5.0 and dChip.
 
Submission date Jun 27, 2005
Last update date Apr 13, 2010
Contact name Patricia L. Dahia
E-mail(s) dahia@uthscsa.edu
Phone 210 5674866
Organization name UTHSCSA
Department Medicine/Cel&Struct Biology
Street address 7703 Floyd Curl Dr MC7880
City San Antonio
State/province TX
ZIP/Postal code 78229
Country USA
 
Platform ID GPL96
Series (2)
GSE2841 Expression Profiling of pheochromocytomas of various genetic origins
GSE19987 Germline Mutations in TMEM127 Confer Susceptibility to Pheochromocytoma

Data table header descriptions
ID_REF probe set
VALUE dChip normalized and modelled signal intensity
ABS_CALL MAS 5.0 Detection Call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 928.233 P
AFFX-BioB-M_at 1134.81 P
AFFX-BioB-3_at 1043.7 P
AFFX-BioC-5_at 1505.52 P
AFFX-BioC-3_at 1588.24 P
AFFX-BioDn-5_at 1430.72 P
AFFX-BioDn-3_at 4440.38 P
AFFX-CreX-5_at 7505.51 P
AFFX-CreX-3_at 10833 P
AFFX-DapX-5_at 26.4846 A
AFFX-DapX-M_at 29.8681 A
AFFX-DapX-3_at 31.1643 A
AFFX-LysX-5_at 44.2011 A
AFFX-LysX-M_at 110.805 A
AFFX-LysX-3_at 41.0404 A
AFFX-PheX-5_at 26.1088 A
AFFX-PheX-M_at 27.647 A
AFFX-PheX-3_at 129.645 A
AFFX-ThrX-5_at 87.6053 A
AFFX-ThrX-M_at 16.4333 A

Total number of rows: 22283

Table truncated, full table size 453 Kbytes.




Supplementary file Size Download File type/resource
GSM62260.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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