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Sample GSM62266 Query DataSets for GSM62266
Status Public on Aug 12, 2005
Title P93 pheochromocytoma
Sample type RNA
 
Source name flash-frozen tumor specimen
Organism Homo sapiens
Characteristics tumor type: pheochromocytoma
genetic class: B_SDHB
tumor location: extraadrenal
Extracted molecule total RNA
Extraction protocol Trizol as described in Monti S et al. Blood. 2005 Mar 1;105(5):1851-61.
Label biotin
Label protocol Approximately 10 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description sample: P93
Data processing Affymetrix Microarray Suite version 5.0 and dChip.
 
Submission date Jun 27, 2005
Last update date Apr 13, 2010
Contact name Patricia L. Dahia
E-mail(s) dahia@uthscsa.edu
Phone 210 5674866
Organization name UTHSCSA
Department Medicine/Cel&Struct Biology
Street address 7703 Floyd Curl Dr MC7880
City San Antonio
State/province TX
ZIP/Postal code 78229
Country USA
 
Platform ID GPL96
Series (2)
GSE2841 Expression Profiling of pheochromocytomas of various genetic origins
GSE19987 Germline Mutations in TMEM127 Confer Susceptibility to Pheochromocytoma

Data table header descriptions
ID_REF probe set
VALUE dChip normalized and modelled signal intensity
ABS_CALL MAS 5.0 Detection Call

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 989.89 P
AFFX-BioB-M_at 1407.94 P
AFFX-BioB-3_at 1175.93 P
AFFX-BioC-5_at 1733.99 P
AFFX-BioC-3_at 1975.89 P
AFFX-BioDn-5_at 1930.34 P
AFFX-BioDn-3_at 5547.4 P
AFFX-CreX-5_at 8273.21 P
AFFX-CreX-3_at 11172 P
AFFX-DapX-5_at 26.4714 A
AFFX-DapX-M_at 50.8968 A
AFFX-DapX-3_at 38.2555 A
AFFX-LysX-5_at 27.8482 A
AFFX-LysX-M_at 133.608 A
AFFX-LysX-3_at 102.915 A
AFFX-PheX-5_at 41.6016 A
AFFX-PheX-M_at 53.6108 A
AFFX-PheX-3_at 147.328 A
AFFX-ThrX-5_at 120.184 A
AFFX-ThrX-M_at 25.6555 A

Total number of rows: 22283

Table truncated, full table size 453 Kbytes.




Supplementary file Size Download File type/resource
GSM62266.CEL.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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