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Sample GSM62965 Query DataSets for GSM62965
Status Public on Feb 21, 2006
Title H226
Sample type genomic
 
Channel 1
Source name H226 Squamous Cell Carcinoma Cell Line
Organism Homo sapiens
Characteristics ATTC catalogue number CRL-5826
Extracted molecule genomic DNA
Label Cyanine 5
 
Channel 2
Source name normal male
Organism Homo sapiens
Characteristics NOVAGEN POOLED MALE REFERENCE GENOMIC DNA
Extracted molecule genomic DNA
Label Cyanine 3
 
 
Description cyanine 5 = sample
cyanine 3 = reference
Data processing N/A
 
Submission date Jul 04, 2005
Last update date Feb 21, 2006
Contact name William Wallace Lockwood
E-mail(s) william.lockwood@nih.gov
Organization name National Human Genome Research Institute
Street address 50 South Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2043
Series (1)
GSE2922 High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Median Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Median Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy5/Cy3
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Median Intensity (w595) Background Median Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 4574.39 4726.2 1711 3016 2863.39 1710.195 61.6651 22.41865 0.9295186 1.07579 -0.1054442 0.1053959
2 2976.626 3745.51 1682.5 2938.5 1294.126 807.006 27.10528 17.61606 0.890273 1.123213 -0.1676803 0.167632
3 4025.7 4440.7 1663.5 2950 2362.199 1490.699 60.2613 34.5065 0.8797309 1.136673 -0.1848658 0.1848175
4 4232.04 4704.15 1695 2970 2537.036 1734.155 50.3306 31.3066 0.8121982 1.231185 -0.3000963 0.300048
5 3640.91 4181.13 1743 2985 1897.915 1196.134 35.0241 23.7418 0.8808866 1.135182 -0.1829717 0.1829233
6 5640.88 5207.21 1771 2984 3869.88 2223.208 98.5803 57.9512 0.9663636 1.034773 -0.049362 0.04931363
7 6042.61 5442.95 1786.5 2985.5 4256.11 2457.452 120.8639 51.8056 0.9615051 1.040001 -0.05663359 0.05658522
8 4911.91 4717.13 1812 3001 3099.915 1716.134 77.2561 41.2788 1.002817 0.9971574 0.004058605 -0.004106971
9 4560.82 4495.12 1792.5 3008 2768.319 1487.121 57.048 34.8379 1.033459 0.9675917 0.0474813 -0.04752967
10 6655.28 5883.98 1774.5 3045 4880.78 2838.976 101.0822 57.4741 0.954445 1.047694 -0.06726604 0.06721768
11 5101.83 4810.84 1784 3034 3317.83 1776.841 77.4937 33.7423 1.036642 0.9646211 0.05191732 -0.05196569
12 5559.23 5005.37 1817.5 3007 3741.73 1998.374 91.1628 56.2157 1.039487 0.961981 0.05587137 -0.05591974
13 6305.79 5505.98 1832 3005 4473.79 2500.976 98.808 70.2775 0.9930925 1.006922 -0.01000004 0.009951678
14 4789.06 4642.68 1787 2967 3002.061 1675.683 68.241 34.0643 0.9946056 1.00539 -0.007803435 0.007755068
15 5781.6 5084.82 1826 3003 3955.6 2081.819 98.125 56.5939 1.054855 0.9479655 0.07704515 -0.07709351
16 5125.49 4578.24 1829.5 3009.5 3295.99 1568.741 86.3663 43.1539 1.16643 0.8572882 0.2220994 -0.2221477
17 5157.06 4852.5 1858 3040 3299.06 1812.5 85.5143 41.1267 1.010499 0.989577 0.0150677 -0.01511607
18 7728.05 6391.93 1845 3046 5883.05 3345.93 128.2208 67.6183 0.9761334 1.024416 -0.03484982 0.03480145
19 4424.07 4411.09 1815 3003 2609.073 1408.085 54.4019 32.7113 1.028681 0.9720865 0.04079515 -0.04084352
20 6568.09 5843.37 1786 3017 4782.09 2826.366 80.0879 60.2768 0.9393172 1.064567 -0.09031569 0.09026733

Total number of rows: 104544

Table truncated, full table size 10921 Kbytes.




Supplementary data files not provided
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