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Sample GSM638669 Query DataSets for GSM638669
Status Public on Feb 15, 2011
Title HDF51IPS10P37_161_900_1_2
Sample type genomic
 
Source name Undifferentiated hiPSC, generated from human dermal fibroblasts
Organism Homo sapiens
Characteristics cell type: HIPSC
passage number: 37
Extracted molecule genomic DNA
Extraction protocol Qiagen DNeasy Blood and Tissue Kit
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol Scanned on a BeadArray Reader (Illumina) using standard Illumina Protocol.
Description Genomic DNA extracted was genotyped using HumanOmni1-Quad BeadChip Genotyping BeadChips (Illumina).
Data processing We have used the Illumina Genome Studio software version 2010.2 to generate the SNP calls.
 
Submission date Dec 11, 2010
Last update date Feb 15, 2011
Contact name GULSAH ALTUN
E-mail(s) gulsah@scripps.edu
Phone (858) 784 7753
Fax (858) 784 7211
Organization name THE SCRIPPS RESEARCH INSTITUTE
Street address 3030 Science Park Rd. 3rd floor, room 3020
City SAN DIEGO
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL8882
Series (1)
GSE25925 Dynamic Changes in the Copy Number of Pluripotency and Cell Proliferation Genes in Human ES and iPS Cells during Reprogramming and Time in Culture

Data table header descriptions
ID_REF
VALUE SNP calls
HDF51IPS10P37_161_900_1_2.Score
HDF51IPS10P37_161_900_1_2.Theta
HDF51IPS10P37_161_900_1_2.R
HDF51IPS10P37_161_900_1_2.B Allele Freq
HDF51IPS10P37_161_900_1_2.Log R Ratio

Data table
ID_REF VALUE HDF51IPS10P37_161_900_1_2.Score HDF51IPS10P37_161_900_1_2.Theta HDF51IPS10P37_161_900_1_2.R HDF51IPS10P37_161_900_1_2.B Allele Freq HDF51IPS10P37_161_900_1_2.Log R Ratio
200006 AB 0.8273118 0.4451316 2.642223 0.5015303 0.1198891
200052 BB 0.9487 0.9941994 0.8605106 1 -0.1656127
200053 AA 0.6644778 0.1254973 1.234798 0.05788847 -0.3967876
200070 AB 0.8985731 0.7194009 0.4924341 0.6629501 -0.5528919
200078 AB 0.6884917 0.5839172 2.753683 0.5526264 0.06975737
200087 AB 0.8084779 0.6005456 1.414464 0.5607554 -0.07596362
200096 BB 0.9041256 0.9875535 1.135241 1 0.03616824
200124 AB 0.877098 0.6259784 1.288493 0.509153 0.08039321
200199 AB 0.9437442 0.4587474 1.355835 0.5046757 0.1297215
400630 AA 0.8781115 0.0002535745 0.8472465 0.00 0.2562589
401327 BB 0.8785409 0.9808725 1.240476 1 0.4600087
401753 AB 0.630483 0.5044823 1.441393 0.5155892 -0.2619127
500301 BB 0.9310601 0.9886632 1.123626 1 -0.03158114
500556 AA 0.8736695 0.02104329 0.8869322 0.00 0.06185716
500660 AA 0.5118521 0.03733147 1.264277 0.01356271 0.2011803
500694 BB 0.715772 0.9660166 0.9005173 0.9965733 -0.0947646
500710 AA 0.7286785 0.02332441 1.313072 0.00 -0.03362578
ABO_SNP1 BB 0.3991952 0.9762665 1.711724 0.9997219 0.1002892
DI_SNP1 BB 0.5118521 0.9748188 0.9799709 1 -0.1202673
FY_SNP2 BB 0.4958491 0.9750627 0.9146167 1 0.01632628

Total number of rows: 1048713

Table truncated, full table size 61668 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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