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Sample GSM66061 Query DataSets for GSM66061
Status Public on Mar 24, 2006
Title Blood_Reverse
Sample type RNA
 
Channel 1
Source name Universal Control 635
Organism Bos taurus
Characteristics Total RNA from bovine cell cultures of :
Brain
EBTR (tracheal cell line)
MDBK (kidney cell line)
BL-30 (lymphocyte line)
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Blood 532
Organism Bos taurus
Characteristics Male, 2 week old Jersey calf
Extracted molecule total RNA
Label Cy3
 
 
Description Samples were labeled with an indirect labeling protocol using amino-allyl dUTP and hybridized overnight at 42C
Data processing Value = log2 ratio of background corrected 632 median/background corrected 532 median
 
Submission date Jul 27, 2005
Last update date Mar 24, 2006
Contact name Mark Robert Band
E-mail(s) markband@uiuc.edu
Phone 217 244 3930
Fax 217 265 5066
Organization name University of Illinois
Department Biotechnology
Lab ERML 356
Street address 1201 W. Gregory Dr
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Platform ID GPL2672
Series (1)
GSE3029 Gene expression profiling of 19 cattle tissues reveals unique patterns related to tissue function

Data table header descriptions
ID_REF
F635 Median median feature pixel intensity for 635 channel
F635 Mean mean feature pixel intensity for 635 channel
F635 SD standard deviation of pixel intensity for 635 channel
B635 Median median local background pixel intensity for 635 channel
B635 Mean mean local background pixel intensity for 635 channel
B635 SD standard deviation of local background intensity for 635 channel
F532 Median median feature pixel intensity for 532 channel
F532 Mean mean feature pixel intensity for 532 channel
F532 SD standard deviation of pixel intensity for 532 channel
B532 Median median local background pixel intensity for 532 channel
B532 Mean mean local background pixel intensity for 532 channel
B532 SD standard deviation of local background intensity for 532 channel
VALUE log2 transform of the ratio of medians 635/532
Flags 0=present, -50=absent, -100=flagged bad, 50=flagged present, 100=flagged good

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD VALUE Flags
1 740 738 274 324 338 128 269 257 85 106 109 32 1.352 0
2 497 528 205 319 331 119 204 220 101 109 128 238 0.906 0
3 646 644 162 327 335 130 190 192 34 107 118 81 1.942 0
4 371 393 108 329 334 120 154 175 87 108 118 51 -0.131 0
5 995 931 290 328 339 117 423 475 344 103 113 68 1.06 0
6 514 513 174 320 330 126 247 250 95 101 115 138 0.41 0
7 524 552 159 321 333 122 244 269 135 99 108 113 0.485 0
8 470 491 153 330 336 129 145 186 232 100 172 696 1.637 0
9 378 388 124 325 343 125 190 186 40 93 114 268 -0.872 0
10 3619 3543 700 335 348 123 1599 1510 367 96 111 162 1.128 0
11 562 575 160 325 332 122 286 297 60 93 289 2914 0.296 0
12 578 572 186 324 328 125 250 258 51 94 110 86 0.703 0
13 664 649 228 321 333 124 297 366 618 93 108 71 0.75 0
14 450 476 172 304 318 114 174 354 1204 95 138 616 0.886 0
15 471 461 123 313 323 123 252 266 109 90 130 612 -0.036 0
16 801 764 246 315 324 118 419 410 125 87 89 14 0.55 0
17 366 388 129 301 321 118 162 164 30 90 94 39 -0.148 0
18 587 628 209 310 324 123 260 282 122 93 100 52 0.73 0
19 353 364 129 299 318 119 160 198 175 91 104 98 -0.354 0
20 391 399 138 318 331 119 182 178 56 87 89 21 -0.38 0

Total number of rows: 16128

Table truncated, full table size 924 Kbytes.




Supplementary data files not provided
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