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Sample GSM66760

Query DataSets for GSM66760

Status

Public on Mar 24, 2006

Title

Rumen_Reverse

Sample type

RNA

Channel 1

Source name

Universal Control 635

Organism

Characteristics

Total RNA from bovine cell cultures of :
Brain
EBTR (tracheal cell line)
MDBK (kidney cell line)
BL-30 (lymphocyte line)

Extracted molecule

total RNA

Label

Cy5

Channel 2

Source name

Rumen 532

Organism

Characteristics

Male, 2 week old Jersey calf

Extracted molecule

total RNA

Label

Cy3

Description

Samples were labeled with an indirect labeling protocol using amino-allyl dUTP and hybridized overnight at 42C

Data processing

Value = log2 ratio of background corrected 632 median/background corrected 532 median

Submission date

Jul 28, 2005

Last update date

Mar 24, 2006

Contact name

Mark Robert Band

E-mail(s)

markband@uiuc.edu

Phone

217 244 3930

Fax

217 265 5066

Organization name

University of Illinois

Department

Biotechnology

Lab

ERML 356

Street address

1201 W. Gregory Dr

City

Urbana

State/province

IL

ZIP/Postal code

61801

Country

USA

Platform ID

Series (1)

Gene expression profiling of 19 cattle tissues reveals unique patterns related to tissue function

Data table header descriptions
ID_REF
F635 Median	median feature pixel intensity for 635 channel
F635 Mean	mean feature pixel intensity for 635 channel
F635 SD	standard deviation of pixel intensity for 635 channel
B635 Median	median local background pixel intensity for 635 channel
B635 Mean	mean local background pixel intensity for 635 channel
B635 SD	standard deviation of local background intensity for 635 channel
F532 Median	median feature pixel intensity for 532 channel
F532 Mean	mean feature pixel intensity for 532 channel
F532 SD	standard deviation of pixel intensity for 532 channel
B532 Median	median local background pixel intensity for 532 channel
B532 Mean	mean local background pixel intensity for 532 channel
B532 SD	standard deviation of local background intensity for 532 channel
VALUE	log2 transform of the ratio of medians 635/532
Flags	0=present, -50=absent, -100=flagged bad, 50=flagged present, 100=flagged good

Data table
ID_REF	F635 Median	F635 Mean	F635 SD	B635 Median	B635 Mean	B635 SD	F532 Median	F532 Mean	F532 SD	B532 Median	B532 Mean	B532 SD	VALUE	Flags
1	2313	2312	535	196	211	106	2006	2020	384	334	360	151	0.34	0
2	974	1025	379	201	213	112	2133	2180	560	330	349	150	-1.222	0
3	1918	1762	875	195	207	106	1436	1396	674	281	300	158	0.577	0
4	504	515	225	187	198	114	687	716	290	261	282	227	-0.426	0
5	2877	2975	705	180	224	684	2840	2774	678	265	440	2226	0.067	0
6	1590	1535	338	176	185	93	2082	2050	590	255	255	76	-0.37	0
7	3090	3176	570	175	187	87	3101	3087	797	246	251	75	0.03	0
8	1396	1442	440	174	193	101	1447	1443	484	236	248	70	0.013	0
9	415	445	204	182	195	97	510	499	162	245	256	81	-0.186	0
10	18831	17841	3828	188	192	88	24185	22621	5825	245	251	80	-0.361	0
11	3163	3142	838	179	191	97	3421	3426	548	230	234	75	-0.097	0
12	1468	1454	471	171	186	95	1784	1754	396	231	246	111	-0.26	0
13	3534	3499	744	184	269	660	2883	2879	503	238	470	2103	0.341	0
14	1579	1621	480	177	187	87	2067	2012	479	225	230	73	-0.394	0
15	3570	3525	531	169	194	125	3676	3595	924	224	246	365	-0.021	0
16	2174	2130	616	179	199	112	2844	2792	968	221	229	81	-0.395	0
17	3177	3077	569	175	194	111	3249	3104	675	223	227	76	-0.011	0
18	1531	1615	469	180	195	95	1744	1763	393	214	224	100	-0.18	0
19	846	825	274	185	196	94	684	735	330	221	229	106	0.514	0
20	1087	1121	387	185	198	96	501	511	213	206	212	70	1.612	0

Total number of rows: 16128

Table truncated, full table size 986 Kbytes.

Supplementary data files not provided

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