|
Status |
Public on Nov 05, 2022 |
Title |
JMC160-3-5 Batch2 |
Sample type |
SRA |
|
|
Source name |
JMC160-3-5
|
Organism |
Candida albicans |
Characteristics |
strain: JMC160-3-5 phenotype: caspofungin adapted
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was harvested using Zymo YeaSTar kit following manufacturer's protocols. Illumina TruSeq RNA library kit following manufacturer's protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
|
|
Data processing |
Sequences aligned against the C. albicans SC5314 genome using the Splice Transcript Alignment to a Reference (STAR) algorithm counted with HTSeq, normalized for total counts (counts per million, CPM). Non-specific filtering strategy used to remove genes with low expression values Differential expression was assessed by DESeq2 cpm Normalization Summerized by Htseq Assembly: C. albicans SC5314 genome ASM18296v3 Supplementary files format and content: text file from deSeq
|
|
|
Submission date |
Nov 02, 2022 |
Last update date |
Nov 05, 2022 |
Contact name |
Soumyaroop Bhattacharya |
E-mail(s) |
soumyaroop_bhattacharya@urmc.rochester.edu
|
Phone |
5852764683
|
Organization name |
University of Rochester
|
Street address |
601 Elmwood Ave Box 703
|
City |
Rochester |
State/province |
NY |
ZIP/Postal code |
14642 |
Country |
USA |
|
|
Platform ID |
GPL19036 |
Series (1) |
GSE217094 |
Multiple genes of Candida albicans influencing echinocandin susceptibility in caspofungin-adapted mutants |
|
Relations |
BioSample |
SAMN31572484 |
SRA |
SRX18120651 |