|
| Status |
Public on Nov 05, 2022 |
| Title |
JMC160-3-5 Batch2 |
| Sample type |
SRA |
| |
|
| Source name |
JMC160-3-5
|
| Organism |
Candida albicans |
| Characteristics |
strain: JMC160-3-5
phenotype: caspofungin adapted
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was harvested using Zymo YeaSTar kit following manufacturer's protocols.
Illumina TruSeq RNA library kit following manufacturer's protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Data processing |
Sequences aligned against the C. albicans SC5314 genome using the Splice Transcript Alignment to a Reference (STAR) algorithm counted with HTSeq, normalized for total counts (counts per million, CPM).
Non-specific filtering strategy used to remove genes with low expression values
Differential expression was assessed by DESeq2
cpm Normalization
Summerized by Htseq
Assembly: C. albicans SC5314 genome ASM18296v3
Supplementary files format and content: text file from deSeq
|
| |
|
| Submission date |
Nov 02, 2022 |
| Last update date |
Nov 05, 2022 |
| Contact name |
Soumyaroop Bhattacharya |
| E-mail(s) |
soumyaroop_bhattacharya@urmc.rochester.edu
|
| Phone |
5852764683
|
| Organization name |
University of Rochester
|
| Street address |
601 Elmwood Ave Box 703
|
| City |
Rochester |
| State/province |
NY |
| ZIP/Postal code |
14642 |
| Country |
USA |
| |
|
| Platform ID |
GPL19036 |
| Series (1) |
| GSE217094 |
Multiple genes of Candida albicans influencing echinocandin susceptibility in caspofungin-adapted mutants |
|
| Relations |
| BioSample |
SAMN31572484 |
| SRA |
SRX18120651 |
