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Sample GSM67793 Query DataSets for GSM67793
Status Public on Nov 30, 2005
Title MicMa020_Agilent
Sample type RNA
 
Channel 1
Source name MicMa020_Agilent with Cy5
Organism Homo sapiens
Characteristics early stage, breast carcinoma
Extracted molecule total RNA
Extraction protocol not provided
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics early stage, breast carcinoma
Extracted molecule total RNA
Extraction protocol not provided
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description biopsy of breast carcinoma
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Aug 08, 2005
Last update date Feb 23, 2008
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE3155 Gene expression profiling of the 20 human early breast carcinomas by three miaroarray platforms

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
3 0.084837753 322.9926 392.6723 138 107.8929
4 0.021298052 334.122 350.9159 139.5714 102.4643
5 0.137543542 1126.848 1546.71 241.8438 254.4688
6 0.082140437 161.3653 194.9623 118.871 81.64516
8 -0.001465447 56.97879 56.78685 106.6667 63.36667
9 0.106243569 335.4098 428.3702 140.6207 113.0345
10 0.022693488 797.4208 840.1968 199.3871 165.8387
12 0.266053805 3858.228 7119.373 576.0667 997.1
13 0.159151492 120.4212 173.7218 115.1 79.16667
15 0 29.10581 38.77728 102.4 58.43333
16 0 26.4455 45.0737 101.0417 58.16667
17 -0.033564949 310.9681 287.8398 139 95.03448
18 0.264801863 783.8697 1442.267 199.8276 243
19 0.13081883 5239.969 7081.863 747.0345 993.7931
20 -0.109789228 2012.6278 1558.2138 359.53268 257.83833
22 0.239594918 35.94792 62.41209 106.1667 64.86667
23 -0.239533113 4710.6757 2709.4565 692.253 413.61783
24 0.179735019 2924.28 4423.378 465.5172 637.2069
25 -0.041820067 8987.28 8162.219 1209.094 1138.125
26 0.155710324 485.4041 694.7263 162.2333 148.7333

Total number of rows: 40492

Table truncated, full table size 2078 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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